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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 439 Structures.

Refinements

Structure Determination Methodology

experimental (439)

Scientific Name of Source Organism

	Homo sapiens (187)
	Mus musculus (21)
	synthetic construct (18)
	Escherichia coli (13)
	Saccharolobus solfataricus P2 (9)
	Streptomyces viridosporus (9)
	Streptomyces maritimus (8)
	Arabidopsis thaliana (6)
	Escherichia coli K-12 (5)
	Spinacia oleracea (5)

More...

Taxonomy

	Eukaryota (256)
	Bacteria (139)
	Archaea (22)
	other sequences (18)
	Riboviria (15)
	Duplodnaviria (3)
	unclassified sequences (2)
	Eukaryota (eukaryotes) (1)
	Monodnaviria (1)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (439)

Polymer Entity Type

	Protein (417)
	DNA (38)
	RNA (7)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (28)
	1.5 - 2.0 (131)
	2.0 - 2.5 (155)
	2.5 - 3.0 (76)
	3.0 - 3.5 (30)
	3.5 - 4.0 (14)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (9)
	2000 - 2004 (40)
	2005 - 2009 (68)
	2010 - 2014 (80)
	2015 - 2019 (137)
	2020 - 2024 (100)
	2025 - 2029 (3)

Enzyme Classification Name

	Oxidoreductases (85)
	Hydrolases (56)
	Transferases (45)
	Lyases (12)
	Isomerases (7)
	Ligases (5)

Membrane Protein Annotation

	PDBTM (65)
	MemProtMD (18)
	mpstruc (16)
	OPM (15)

Symmetry Type

	Asymmetric (195)
	Cyclic (183)
	Dihedral (61)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (97)
	Alpha and beta proteins (a/b) (86)
	All beta proteins (68)
	All alpha proteins (15)
	Artifacts (29)
	Multi-domain proteins (alpha and beta) (4)
	Small proteins (2)
	Coiled coil proteins (2)
	Peptides (1)

AllSelected

1 to 25 of 439 Structures

Page 1 of 18

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184D \| pdb_0000184d	Download File View File

SELF-ASSOCIATION OF A DNA LOOP CREATES A QUADRUPLEX: CRYSTAL STRUCTURE OF D(GCATGCT) AT 1.8 ANGSTROMS RESOLUTION

Leonard, G.A., Zhang, S., Peterson, M.R., Harrop, S.J., Helliwell, J.R., Cruse, W.B.T., Langlois D'Estaintot, B., Kennard, O., Brown, T., Hunter, W.N.

(1995) Structure 3: 335-340

Released	1995-07-10
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	DNA (5'-D(GPCPAPTPGPCP*T)-3') (nucleic acid)
Unique Ligands	MG

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1A7A \| pdb_00001a7a	Download File View File

STRUCTURE OF HUMAN PLACENTAL S-ADENOSYLHOMOCYSTEINE HYDROLASE: DETERMINATION OF A 30 SELENIUM ATOM SUBSTRUCTURE FROM DATA AT A SINGLE WAVELENGTH

Turner, M.A., Yuan, C.-S., Borchardt, R.T., Hershfield, M.S., Smith, G.D., Howell, P.L.

(1998) Nat Struct Biol 5: 369-376

Released	1999-04-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	S-ADENOSYLHOMOCYSTEINE HYDROLASE (protein)
Unique Ligands	ADC, NAD

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1AY2 \| pdb_00001ay2	Download File View File

STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION

Forest, K.T., Parge, H.E., Tainer, J.A.

(1995) Nature 378: 32-38

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	TYPE 4 PILIN (protein)
Unique Ligands	HTO, PT
Unique branched monosaccharides	GLA, NAG

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1AZW \| pdb_00001azw	Download File View File

PROLINE IMINOPEPTIDASE FROM XANTHOMONAS CAMPESTRIS PV. CITRI

Medrano, F.J., Alonso, J., Garcia, J.L., Romero, A., Bode, W., Gomis-Ruth, F.X.

(1998) EMBO J 17: 1-9

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Xanthomonas citri
Macromolecule	PROLINE IMINOPEPTIDASE (protein)

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1B1J \| pdb_00001b1j	Download File View File

CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN VARIANT H13A.

Leonidas, D.D., Acharya, K.R.

(1999) J Mol Biology 285: 1209-1233

Released	1999-04-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HYDROLASE ANGIOGENIN (protein)

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1BLB \| pdb_00001blb	Download File View File

CLOSE PACKING OF AN OLIGOMERIC EYE LENS BETA-CRYSTALLIN INDUCES LOSS OF SYMMETRY AND ORDERING OF SEQUENCE EXTENSIONS

Nalini, V., Bax, B., Driessen, H., Moss, D.S., Lindley, P.F., Slingsby, C.

(1994) J Mol Biology 236: 1250-1258

Released	1994-12-20
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Bos taurus
Macromolecule	BETA B2-CRYSTALLIN (protein)

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1EAX \| pdb_00001eax	Download File View File

Crystal structure of MTSP1 (matriptase)

Friedrich, R., Bode, W.

(2002) J Biological Chem 277: 2160

Released	2002-01-28
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	SUPPRESSOR OF TUMORIGENICITY 14 (protein)
Unique Ligands	BEN, SO4

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1EG6 \| pdb_00001eg6	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF D(CG(5-BRU)ACG) COMPLEXES TO A PHENAZINE

Cardin, C.J., Denny, W.A., Hobbs, J.R., Thorpe, J.H.

(2000) Biochemistry 39: 15055-15061

Released	2001-01-03
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(CPGP(BRO)UPAPCPG)-3' (nucleic acid)
Unique Ligands	3CO, BFA, BR

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1EKJ \| pdb_00001ekj	Download File View File

THE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF BETA CARBONIC ANHYDRASE FROM THE C3 DICOT PISUM SATIVUM

Kimber, M.S., Pai, E.F.

(2000) EMBO J 19: 1407-1418

Released	2000-06-07
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Pisum sativum
Macromolecule	BETA-CARBONIC ANHYDRASE (protein)
Unique Ligands	ACT, AZI, CIT, CL, CU, EDO, ZN

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1FD5 \| pdb_00001fd5	Download File View File

BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (BISACRIDINE COMPLEX)

Yang, X.-L., Robinson, H., Gao, Y.-G., Wang, A.H.-J.

(2000) Biochemistry 39: 10950-10957

Released	2000-08-07
Method	X-RAY DIFFRACTION 1.1 Å
Macromolecule	DNA (5'-D(CPGPTPAPCPG)-3') (nucleic acid)
Unique Ligands	B9A, CO, MG

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1FDG \| pdb_00001fdg	Download File View File

BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (AMETANTRONE COMPLEX)

Yang, X.-L., Robinson, H., Gao, Y.-G., Wang, A.H.-J.

(2000) Biochemistry 39: 10950-10957

Released	2000-08-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPGPTPAPCPG)-3') (nucleic acid)
Unique Ligands	9TA, CO, MG

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1FN1 \| pdb_00001fn1	Download File View File

CRYSTAL STRUCTURE OF 9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CG(5BR)UACG)2

Adams, A., Guss, J.M., Collyer, C.A., Denny, W.A., Wakelin, L.P.G.

(2000) Nucleic Acids Res 28: 4244-4253

Released	2000-10-30
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(CPGP(BRO)UPAPCPG)-3') (nucleic acid) DNA (5'-D(PGP(BRO)UPAPCP*G)-3') (nucleic acid)
Unique Ligands	8AD, CO

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1FN2 \| pdb_00001fn2	Download File View File

9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2

Adams, A., Guss, J.M., Collyer, C.A., Denny, W.A., Wakelin, L.P.G.

(2000) Nucleic Acids Res 28: 4244-4253

Released	2000-10-30
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(CPGPTPAPCPG)-3') (nucleic acid) DNA (5'-D(PGPTPAPCP*G)-3') (nucleic acid)
Unique Ligands	8AD, CO, NA

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1GOS \| pdb_00001gos	Download File View File

Human Monoamine Oxidase B

Binda, C., Newton-Vinson, P., Hubalek, F., Edmondson, D.E., Mattevi, A.

(2001) Nat Struct Biol 9: 22

Released	2001-11-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	MONOAMINE OXIDASE (protein)
Unique Ligands	FAD, NYP

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1JN0 \| pdb_00001jn0	Download File View File

Crystal structure of the non-regulatory A4 isoform of spinach chloroplast glyceraldehyde-3-phosphate dehydrogenase complexed with NADP

Fermani, S., Ripamonti, A., Sabatino, P., Zanotti, G., Scagliarini, S., Sparla, F., Trost, P., Pupillo, P.

(2001) J Mol Biology 314: 527-542

Released	2001-11-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Spinacia oleracea
Macromolecule	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE A (protein)
Unique Ligands	NDP, SO4

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1K2L \| pdb_00001k2l	Download File View File

STRUCTURAL CHARACTERIZATION OF BISINTERCALATION IN HIGHER-ORDER DNA AT A JUNCTION-LIKE QUADRUPLEX

Teixeira, S.C.M., Thorpe, J.H., Todd, A.K., Powell, H.R., Adams, A., Wakelin, L.P.G., Denny, W.A., Cardin, C.J.

(2002) J Mol Biology 323: 167-171

Released	2002-10-16
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	BDC, CO

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1KKO \| pdb_00001kko	Download File View File

CRYSTAL STRUCTURE OF CITROBACTER AMALONATICUS METHYLASPARTATE AMMONIA LYASE

Levy, C.W., Buckley, P.A., Sedelnikova, S., Kato, Y., Asano, Y., Rice, D.W., Baker, P.J.

(2002) Structure 10: 105-113

Released	2002-01-30
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Citrobacter amalonaticus
Macromolecule	3-METHYLASPARTATE AMMONIA-LYASE (protein)
Unique Ligands	SO4

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1KKR \| pdb_00001kkr	Download File View File

CRYSTAL STRUCTURE OF CITROBACTER AMALONATICUS METHYLASPARTATE AMMONIA LYASE CONTAINING (2S,3S)-3-METHYLASPARTIC ACID

Levy, C.W., Buckley, P.A., Sedelnikova, S., Kato, K., Asano, Y., Rice, D.W., Baker, P.J.

(2002) Structure 10: 105-113

Released	2002-01-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Citrobacter amalonaticus
Macromolecule	3-METHYLASPARTATE AMMONIA-LYASE (protein)
Unique Ligands	2AS, MG

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1L3Z \| pdb_00001l3z	Download File View File

Crystal Structure Analysis of an RNA Heptamer

Shi, K., Pan, B., Sundaralingam, M.

(2003) Nucleic Acids Res 31: 1392-1397

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.01 Å
Macromolecule	5'-R(GPUPAPUPAPCP*A)-3' (nucleic acid)
Unique Ligands	NA

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1LEI \| pdb_00001lei	Download File View File

The kB DNA sequence from the HLV-LTR functions as an allosteric regulator of HIV transcription

Chen-Park, F., Huang, D.B., Ghosh, G.

(2002) J Biological Chem 277: 24701-24708

Released	2003-04-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT (protein) NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT (protein) 5'-D(CPTPCPAPGPGPGPAPAPAPGPTPAPCPAPGPA)-3' (nucleic acid) 5'-D(TPCPTPGP5ITPAPCP5ITP5ITP5ITPCPCPCPTPGPAPG)-3' (nucleic acid)

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1LH0 \| pdb_00001lh0	Download File View File

Crystal Structure of Salmonella typhimurium OMP Synthase in Complex with MGPRPP and Orotate

Fedorov, A.A., Panneerselvam, K., Shi, W., Grubmeyer, C., Almo, S.C.

(2012) Biochemistry 51: 4397-4405

Released	2002-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	OMP synthase (protein)
Unique Ligands	MG, ORO, PRP

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1LOU \| pdb_00001lou	Download File View File

RIBOSOMAL PROTEIN S6

Otzen, D.E., Kristensen, O., Proctor, M., Oliveberg, M.

(1999) Biochemistry 38: 6499-6511

Released	1998-11-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermus thermophilus
Macromolecule	RIBOSOMAL PROTEIN S6 (protein)

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1MIU \| pdb_00001miu	Download File View File

Structure of a BRCA2-DSS1 complex

Yang, H., Jeffrey, P.D., Miller, J., Kinnucan, E., Sun, Y., Thoma, N.H., Zheng, N., Chen, P.L., Lee, W.H., Pavletich, N.P.

(2002) Science 297: 1837-1848

Released	2002-09-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Breast Cancer type 2 susceptibility protein (protein) Deleted in split hand/split foot protein 1 (protein)
Unique Ligands	HG

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1NBO \| pdb_00001nbo	Download File View File

The dual coenzyme specificity of photosynthetic glyceraldehyde-3-phosphate dehydrogenase interpreted by the crystal structure of A4 isoform complexed with NAD

Falini, G., Fermani, S., Ripamonti, A., Sabatino, P., Sparla, F., Pupillo, P., Trost, P.

(2003) Biochemistry 42: 4631-4639

Released	2003-05-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Spinacia oleracea
Macromolecule	glyceraldehyde-3-phosphate dehydrogenase A (protein)
Unique Ligands	NAD, SO4

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1NPL \| pdb_00001npl	Download File View File

MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM DAFFODIL (NARCISSUS PSEUDONARCISSUS) BULBS IN COMPLEX WITH MANNOSE-ALPHA1,3-MANNOSE

Sauerborn, M.K., Wright, L.M., Reynolds, C.D., Grossmann, J.G., Rizkallah, P.J.

(1999) J Mol Biology 290: 185-199

Released	1998-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Narcissus pseudonarcissus
Macromolecule	PROTEIN (AGGLUTININ) (protein)
Unique Ligands	PO4
Unique branched monosaccharides	MAN

1 to 25 of 439 Structures

Page 1 of 18

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

184D | pdb_0000184d

1A7A | pdb_00001a7a

1AY2 | pdb_00001ay2

1AZW | pdb_00001azw

1B1J | pdb_00001b1j

1BLB | pdb_00001blb

1EAX | pdb_00001eax

1EG6 | pdb_00001eg6

1EKJ | pdb_00001ekj

1FD5 | pdb_00001fd5

1FDG | pdb_00001fdg

1FN1 | pdb_00001fn1

1FN2 | pdb_00001fn2

1GOS | pdb_00001gos

1JN0 | pdb_00001jn0

1K2L | pdb_00001k2l

1KKO | pdb_00001kko

1KKR | pdb_00001kkr

1L3Z | pdb_00001l3z

1LEI | pdb_00001lei

1LH0 | pdb_00001lh0

1LOU | pdb_00001lou

1MIU | pdb_00001miu

1NBO | pdb_00001nbo

1NPL | pdb_00001npl