RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Space Group = "P 1 2 1"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 399 Structures.

Refinements

Structure Determination Methodology

experimental (399)

Scientific Name of Source Organism

	Homo sapiens (100)
	Mus musculus (28)
	synthetic construct (21)
	Rattus norvegicus (12)
	Plasmodium falciparum (9)
	Escherichia coli K-12 (6)
	Lama glama (6)
	Pseudomonas aeruginosa PAO1 (6)
	Saccharolobus solfataricus (6)
	Saccharomyces cerevisiae (6)

More...

Taxonomy

	Eukaryota (213)
	Bacteria (139)
	Riboviria (27)
	Archaea (21)
	other sequences (21)
	Duplodnaviria (7)
	Riboviria (RNA viruses and viroids) (4)
	Varidnaviria (4)
	Viruses incertae sedis (1)

Experimental Method

X-RAY DIFFRACTION (399)

Polymer Entity Type

	Protein (394)
	DNA (22)
	RNA (10)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (25)
	1.5 - 2.0 (116)
	2.0 - 2.5 (123)
	2.5 - 3.0 (89)
	3.0 - 3.5 (31)
	3.5 - 4.0 (9)
	4.0 - 4.5 (3)
	> 4.5 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (9)
	2000 - 2004 (27)
	2005 - 2009 (64)
	2010 - 2014 (78)
	2015 - 2019 (114)
	2020 - 2024 (99)
	2025 - 2029 (7)

Enzyme Classification Name

	Hydrolases (67)
	Transferases (62)
	Oxidoreductases (19)
	Ligases (10)
	Isomerases (9)
	Lyases (8)
	Translocases (4)

Membrane Protein Annotation

	PDBTM (15)
	MemProtMD (13)
	OPM (12)
	mpstruc (11)

Symmetry Type

	Asymmetric (224)
	Cyclic (163)
	Dihedral (23)
	Octahedral (1)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (56)
	Alpha and beta proteins (a/b) (72)
	Alpha and beta proteins (a+b) (46)
	All alpha proteins (36)
	Artifacts (36)
	Small proteins (6)
	Coiled coil proteins (3)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 399 Structures

Page 1 of 16

Sort by

Explore in 3D

1AHW \| pdb_00001ahw	Download File View File

A COMPLEX OF EXTRACELLULAR DOMAIN OF TISSUE FACTOR WITH AN INHIBITORY FAB (5G9)

Huang, M., Syed, R., Stura, E.A., Stone, M.J., Stefanko, R.S., Ruf, W., Edgington, T.S., Wilson, I.A.

(1998) J Mol Biology 275: 873-894

Released	1998-02-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	IMMUNOGLOBULIN FAB 5G9 (HEAVY CHAIN) (protein) IMMUNOGLOBULIN FAB 5G9 (LIGHT CHAIN) (protein) TISSUE FACTOR (protein)

Explore in 3D

1BR2 \| pdb_00001br2	Download File View File

SMOOTH MUSCLE MYOSIN MOTOR DOMAIN COMPLEXED WITH MGADP.ALF4

Dominguez, R., Trybus, K.M., Cohen, C.

(1998) Cell 94: 559-571

Released	1998-09-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Gallus gallus
Macromolecule	MYOSIN (protein)
Unique Ligands	ADP, ALF, MG

Explore in 3D

1D14 \| pdb_00001d14	Download File View File

STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE

Williams, L.D., Egli, M., Ughetto, G., Van Der Marel, G.A., Van Boom, J.H., Quigley, G.J., Wang, A.H.-J., Rich, A., Frederick, C.A.

(1990) J Mol Biology 215: 313-320

Released	1990-10-15
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	DNA (5'-D(CPGPTP(AS)PCPG)-3') (nucleic acid)
Unique Ligands	DM3

Explore in 3D

1DIK \| pdb_00001dik	Download File View File

PYRUVATE PHOSPHATE DIKINASE

Herzberg, O., Chen, C.C.H.

(1996) Proc Natl Acad Sci U S A 93: 2652-2657

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PYRUVATE PHOSPHATE DIKINASE (protein)
Unique Ligands	SO4

Explore in 3D

1E0F \| pdb_00001e0f	Download File View File

Crystal structure of the human alpha-thrombin-haemadin complex: an exosite II-binding inhibitor

Richardson, J.L., Kroeger, B., Hoefken, W., Pereira, P., Huber, R., Bode, W., Fuentes-Prior, P.

(2000) EMBO J 19: 5650

Released	2000-11-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Haemadipsa sylvestris Homo sapiens
Macromolecule	HAEMADIN (protein) THROMBIN (protein)

Explore in 3D

1GGO \| pdb_00001ggo	Download File View File

T453A MUTANT OF PYRUVATE, PHOSPHATE DIKINASE

Li, Z., Herzberg, O.

(2000) J Biological Chem 275: 41156-41165

Released	2001-01-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PROTEIN (PYRUVATE, PHOSPHATE DIKINASE) (protein)
Unique Ligands	SO4

Explore in 3D

1GH4 \| pdb_00001gh4	Download File View File

Structure of the triple mutant (K56M, K120M, K121M) of phospholipase A2

Sekar, K., Velmurugan, D., Tsai, M.D.

(2002) J Mol Biology 324: 755-762

Released	2001-05-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA, MPD

Explore in 3D

1GXB \| pdb_00001gxb	Download File View File

ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH PYROPHOSPHATE AND MAGNESIUM

Mayans, O., Ivens, A., Nissen, L.J., Kirschner, K., Wilmanns, M.

(2002) EMBO J 21: 3245

Released	2003-04-03
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Saccharolobus solfataricus
Macromolecule	ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (protein)
Unique Ligands	MG, POP

Explore in 3D

1HCJ \| pdb_00001hcj	Download File View File

Photoproduct of the wild-type Aequorea victoria Green Fluorescent Protein

Van Thor, J.J., Gensch, T., Hellingwerf, K.J., Johnson, L.

(2002) Nat Struct Biol 9: 37

Released	2001-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN (protein)

Explore in 3D

1HKN \| pdb_00001hkn	Download File View File

A complex between acidic fibroblast growth factor and 5-amino-2-naphthalenesulfonate

Fernandez-Tornero, C., Lozano, R.M., Gimenez-Gallego, G., Romero, A.

(2003) J Biological Chem 278: 21774

Released	2004-03-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HEPARIN-BINDING GROWTH FACTOR 1 (protein)
Unique Ligands	N2M

Explore in 3D

1HUU \| pdb_00001huu	Download File View File

DNA-BINDING PROTEIN HU FROM BACILLUS STEAROTHERMOPHILUS

White, S.W., Tanaka, I., Appelt, K., Wilson, K.S.

(1989) Proteins 5: 281-288

Released	1999-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PROTEIN HU (protein)

Explore in 3D

1IC1 \| pdb_00001ic1	Download File View File

THE CRYSTAL STRUCTURE FOR THE N-TERMINAL TWO DOMAINS OF ICAM-1

Casasnovas, J.M., Stehle, T., Liu, J.-H., Wang, J.-H., Springer, T.A.

(1998) Proc Natl Acad Sci U S A 95: 4134-4139

Released	1998-06-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	INTERCELLULAR ADHESION MOLECULE-1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

1IJY \| pdb_00001ijy	Download File View File

CRYSTAL STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF MOUSE FRIZZLED 8 (MFZ8)

Dann III, C.E., Hsieh, J.C., Rattner, A., Sharma, D., Nathans, J., Leahy, D.J.

(2001) Nature 412: 86-90

Released	2001-07-11
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Mus musculus
Macromolecule	FRIZZLED HOMOLOG 8 (protein)

Explore in 3D

1IV7 \| pdb_00001iv7	Download File View File

Crystal Structure of Single Chain Monellin

Tamada, T., Kato, Y., Kuroki, R.

To be published

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin (protein)

Explore in 3D

1JDE \| pdb_00001jde	Download File View File

K22A mutant of pyruvate, phosphate dikinase

Ye, D., Wei, M., McGuire, M., Huang, K., Kapadia, G., Herzberg, O., Martin, B.M., Dunaway-Mariano, D.

(2001) J Biological Chem 276: 37630-37639

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PYRUVATE, PHOSPHATE DIKINASE (protein)
Unique Ligands	SO4

Explore in 3D

1KBL \| pdb_00001kbl	Download File View File

PYRUVATE PHOSPHATE DIKINASE

Herzberg, O., Chen, C.C., Liu, S.

(2002) Biochemistry 41: 780-787

Released	2002-01-30
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	[Clostridium] symbiosum
Macromolecule	PYRUVATE PHOSPHATE DIKINASE (protein)
Unique Ligands	NH4, SO4

Explore in 3D

1KC7 \| pdb_00001kc7	Download File View File

Pyruvate Phosphate Dikinase with Bound Mg-phosphonopyruvate

Chen, C.C., Howard, A., Herzberg, O.

(2002) Biochemistry 41: 780-787

Released	2002-01-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	[Clostridium] symbiosum
Macromolecule	pyruvate phosphate dikinase (protein)
Unique Ligands	MG, PPR, SO4

Explore in 3D

1KOG \| pdb_00001kog	Download File View File

Crystal structure of E. coli threonyl-tRNA synthetase interacting with the essential domain of its mRNA operator

Torres-Larrios, A., Dock-Bregeon, A.C., Romby, P., Rees, B., Sankaranarayanan, R., Caillet, J., Springer, M., Ehresmann, C., Ehresmann, B., Moras, D.

(2002) Nat Struct Biol 9: 343-347

Released	2002-04-26
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	Threonyl-tRNA synthetase (protein) Threonyl-tRNA synthetase mRNA (nucleic acid)
Unique Ligands	TSB, ZN

Explore in 3D

1KYW \| pdb_00001kyw	Download File View File

Crystal Structure Analysis of Caffeic Acid/5-hydroxyferulic acid 3/5-O-methyltransferase in complex with 5-hydroxyconiferaldehyde

Zubieta, C., Kota, P., Ferrer, J.-L., Dixon, R.A., Noel, J.P.

(2002) Plant Cell 14: 1265-1277

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Medicago sativa
Macromolecule	Caffeic acid 3-O-methyltransferase (protein)
Unique Ligands	HFL, SAH

Explore in 3D

1KYZ \| pdb_00001kyz	Download File View File

Crystal Structure Analysis of Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase Ferulic Acid Complex

Zubieta, C., Kota, P., Ferrer, J.-L., Dixon, R.A., Noel, J.P.

(2002) Plant Cell 14: 1265-1277

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Medicago sativa
Macromolecule	Caffeic acid 3-O-methyltransferase (protein)
Unique Ligands	FER, SAH

Explore in 3D

1L8W \| pdb_00001l8w	Download File View File

Crystal Structure of Lyme Disease Variable Surface Antigen VlsE of Borrelia burgdorferi

Eicken, C., Sharma, V., Klabunde, T., Lawrenz, M.B., Hardham, J.M., Norris, S.J., Sacchettini, J.C.

(2002) J Biological Chem 277: 21691-21696

Released	2002-06-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Borreliella burgdorferi
Macromolecule	VlsE1 (protein)

Explore in 3D

1LDP \| pdb_00001ldp	Download File View File

CRYSTAL STRUCTURE OF MURINE MHC CLASS I H-2LD WITH A MIXTURE OF BOUND PEPTIDES

Speir, J.A., Wilson, I.A.

(1998) Immunity 8: 553-562

Released	1998-06-17
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	MHC CLASS I H-2LD (protein) PEPTIDE (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG, NDG

Explore in 3D

1LF3 \| pdb_00001lf3	Download File View File

CRYSTAL STRUCTURE OF PLASMEPSIN II FROM P FALCIPARUM IN COMPLEX WITH INHIBITOR EH58

Asojo, O.A., Gulnik, S.V., Afonina, E., Yu, B., Ellman, J.A., Haque, T.S., Silva, A.M.

(2003) J Mol Biology 327: 173-181

Released	2002-10-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Plasmodium falciparum
Macromolecule	plasmepsin 2 (protein)
Unique Ligands	EH5

Explore in 3D

1LF4 \| pdb_00001lf4	Download File View File

STRUCTURE OF PLASMEPSIN II

Asojo, O.A., Gulnik, S.V., Afonina, E., Yu, B., Ellman, J.A., Haque, T.S., Silva, A.M.

(2003) J Mol Biology 327: 173-181

Released	2002-10-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Plasmodium falciparum
Macromolecule	Plasmepsin 2 (protein)

Explore in 3D

1MQD \| pdb_00001mqd	Download File View File

X-ray structure of the GluR2 ligand-binding core (S1S2J) in complex with (S)-Des-Me-AMPA at 1.46 A resolution. Crystallization in the presence of lithium sulfate.

Kasper, C., Lunn, M.-L., Liljefors, T., Gouaux, E., Egebjerg, J., Kastrup, J.S.

(2002) FEBS Lett 531: 173-178

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor subunit 2 (protein)
Unique Ligands	GOL, SHI, SO4

1 to 25 of 399 Structures

Page 1 of 16

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AHW | pdb_00001ahw

1BR2 | pdb_00001br2

1D14 | pdb_00001d14

1DIK | pdb_00001dik

1E0F | pdb_00001e0f

1GGO | pdb_00001ggo

1GH4 | pdb_00001gh4

1GXB | pdb_00001gxb

1HCJ | pdb_00001hcj

1HKN | pdb_00001hkn

1HUU | pdb_00001huu

1IC1 | pdb_00001ic1

1IJY | pdb_00001ijy

1IV7 | pdb_00001iv7

1JDE | pdb_00001jde

1KBL | pdb_00001kbl

1KC7 | pdb_00001kc7

1KOG | pdb_00001kog

1KYW | pdb_00001kyw

1KYZ | pdb_00001kyz

1L8W | pdb_00001l8w

1LDP | pdb_00001ldp

1LF3 | pdb_00001lf3

1LF4 | pdb_00001lf4

1MQD | pdb_00001mqd