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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 714 Structures.

Refinements

Structure Determination Methodology

experimental (714)

Scientific Name of Source Organism

	Homo sapiens (175)
	Escherichia coli (69)
	synthetic construct (50)
	Enterobacteria phage HK620 (31)
	Escherichia coli K-12 (20)
	Mus musculus (13)
	Saccharomyces cerevisiae (12)
	Bacillus subtilis (8)
	Human immunodeficiency virus 1 (8)
	Mycobacterium tuberculosis (8)

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Taxonomy

	Eukaryota (291)
	Bacteria (262)
	Riboviria (56)
	Duplodnaviria (54)
	other sequences (50)
	Archaea (29)
	Eukaryota (eukaryotes) (4)
	Riboviria (RNA viruses and viroids) (4)
	Varidnaviria (4)
	Monodnaviria (2)

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Experimental Method

	X-RAY DIFFRACTION (713)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (674)
	RNA (44)
	DNA (8)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (40)
	1.5 - 2.0 (214)
	2.0 - 2.5 (209)
	2.5 - 3.0 (166)
	3.0 - 3.5 (56)
	3.5 - 4.0 (16)
	4.0 - 4.5 (6)
	> 4.5 (7)

Release Date

	1990 - 1994 (20)
	1995 - 1999 (38)
	2000 - 2004 (61)
	2005 - 2009 (94)
	2010 - 2014 (142)
	2015 - 2019 (181)
	2020 - 2024 (171)
	2025 - 2029 (7)

Enzyme Classification Name

	Transferases (155)
	Hydrolases (126)
	Oxidoreductases (36)
	Lyases (27)
	Isomerases (19)
	Ligases (7)
	Translocases (6)

Membrane Protein Annotation

	PDBTM (38)
	MemProtMD (34)
	mpstruc (30)
	OPM (25)

Symmetry Type

	Cyclic (362)
	Asymmetric (220)
	Dihedral (129)
	Tetrahedral (13)

SCOP Classification

	Alpha and beta proteins (a/b) (146)
	Alpha and beta proteins (a+b) (106)
	All beta proteins (55)
	Small proteins (51)
	All alpha proteins (36)
	Artifacts (41)
	Coiled coil proteins (25)
	Membrane and cell surface proteins and peptides (25)
	Multi-domain proteins (alpha and beta) (7)
	Low resolution protein structures (1)

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1 to 25 of 714 Structures

Page 1 of 29

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1A2N \| pdb_00001a2n	Download File View File

STRUCTURE OF THE C115A MUTANT OF MURA COMPLEXED WITH THE FLUORINATED ANALOG OF THE REACTION TETRAHEDRAL INTERMEDIATE

Skarzynski, T.

(1998) Biochemistry 37: 2572-2577

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE (protein)
Unique Ligands	TET

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1ACM \| pdb_00001acm	Download File View File

ARGININE 54 IN THE ACTIVE SITE OF ESCHERICHIA COLI ASPARTATE TRANSCARBAMOYLASE IS CRITICAL FOR CATALYSIS: A SITE-SPECIFIC MUTAGENESIS, NMR AND X-RAY CRYSTALLOGRAPHY STUDY

Stevens, R.C., Kantrowitz, E.R., Lipscomb, W.N.

(1992) Protein Sci 1: 1435-1446

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli (strain K12)
Macromolecule	ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN (protein) ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN (protein)
Unique Ligands	PAL, ZN

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1AF5 \| pdb_00001af5	Download File View File

GROUP I MOBILE INTRON ENDONUCLEASE

Heath, P.J., Stephens, K.M., Monnat Junior, R.J., Stoddard, B.L.

(1997) Nat Struct Biol 4: 468-476

Released	1997-07-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	I-CREI (protein)

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1AIK \| pdb_00001aik	Download File View File

HIV GP41 CORE STRUCTURE

Chan, D.C., Fass, D., Berger, J.M., Kim, P.S.

(1997) Cell 89: 263-273

Released	1997-06-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 GP41 GLYCOPROTEIN (protein)

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1AT1 \| pdb_00001at1	Download File View File

CRYSTAL STRUCTURES OF PHOSPHONOACETAMIDE LIGATED T AND PHOSPHONOACETAMIDE AND MALONATE LIGATED R STATES OF ASPARTATE CARBAMOYLTRANSFERASE AT 2.8-ANGSTROMS RESOLUTION AND NEUTRAL P*H

Gouaux, J.E., Lipscomb, W.N.

(1990) Biochemistry 29: 389-402

Released	1990-10-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN (protein) ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN (protein)
Unique Ligands	MLI, PCT, ZN

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1B66 \| pdb_00001b66	Download File View File

6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE

Ploom, T., Thoeny, B., Yim, J., Lee, S., Nar, H., Leimbacher, W., Huber, R., Richardson, J., Auerbach, G.

(1999) J Mol Biology 286: 851-860

Released	1999-04-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rattus rattus
Macromolecule	6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE (protein)
Unique Ligands	BIO, ZN

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1B6Z \| pdb_00001b6z	Download File View File

6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE

Ploom, T., Thoeny, B., Yim, J., Lee, S., Nar, H., Leimbacher, W., Huber, R., Richardson, J., Auerbach, G.

(1999) J Mol Biology 286: 851-860

Released	2000-01-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	6-pyruvoyl tetrahydropterin synthase (protein)
Unique Ligands	ZN

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1BM2 \| pdb_00001bm2	Download File View File

GRB2-SH2 DOMAIN IN COMPLEX WITH CYCLO-[N-ALPHA-ACETYL-L-THI ALYSYL-O-PHOSPHOTYROSYL-VALYL-ASPARAGYL-VALYL-PROLYL] (PKF273-791)

Rondeau, J.M., Zurini, M.

(1999) J Med Chem 42: 971-980

Released	1998-08-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (GROWTH FACTOR RECEPTOR BOUND PROTEIN 2) (protein) PROTEIN (PKF273-791) (protein)

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1BT9 \| pdb_00001bt9	Download File View File

OMPF PORIN MUTANT D74A

Philippsen, A., Schirmer, T.

(1998) Biochemistry 37: 15663-15670

Released	1999-01-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli B
Macromolecule	PROTEIN (MATRIX PORIN OUTER MEMBRANE PROTEIN F) (protein)

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1CB0 \| pdb_00001cb0	Download File View File

STRUCTURE OF HUMAN 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE AT 1.7 A RESOLUTION

Appleby, T.C., Erion, M.D., Ealick, S.E.

(1999) Structure 7: 629-641

Released	1999-07-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE) (protein)
Unique Ligands	ADE

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1CG6 \| pdb_00001cg6	Download File View File

STRUCTURE OF HUMAN 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEXED WITH 5'-DEOXY-5'-METHYLTHIOADENOSINE AND SULFATE AT 1.7 A RESOLUTION

Appleby, T.C., Erion, M.D., Ealick, S.E.

(1999) Structure 7: 629-641

Released	1999-07-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE) (protein)
Unique Ligands	MTA, SO4

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1CKQ \| pdb_00001ckq	Download File View File

PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAATTCGCG) COMPLEX

Horvath, M., Rosenberg, J.M.

To be published

Released	1999-04-26
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (ENDONUCLEASE) (protein) DNA (5'-D(TPCPGPCPGPAPAPTPTPCPGPCP*G)-3') (nucleic acid)

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1CL8 \| pdb_00001cl8	Download File View File

A PRE-TRANSITION STATE ECO RI ENDONUCLEASE/COGNATE DNA (TCGCGAPTTCGCG) COMPLEX WITH DNA BASE ANALOG PURINE (P)

Horvath, M., Rosenberg, J.M.

To be published

Released	1999-05-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (ENDONUCLEASE) (protein) DNA (5'-D(TPCPGPCPGPAP(PRN)PTPTPCPGPCP*G)-3') (nucleic acid)

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1COI \| pdb_00001coi	Download File View File

DESIGNED TRIMERIC COILED COIL-VALD

Ogihara, N.L., Weiss, M.S., Degrado, W.F., Eisenberg, D.

(1997) Protein Sci 6: 80-88

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	synthetic construct
Macromolecule	COIL-VALD (protein)
Unique Ligands	SO4

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1CZQ \| pdb_00001czq	Download File View File

CRYSTAL STRUCTURE OF THE D10-P1/IQN17 COMPLEX: A D-PEPTIDE INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 COILED-COIL POCKET.

Eckert, D.M., Malashkevich, V.N., Hong, L.H., Carr, P.A., Kim, P.S.

(1999) Cell 99: 103-115

Released	1999-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus Saccharomyces cerevisiae
Macromolecule	D-PEPTIDE INHIBITOR (protein) FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GCN4-PIQI (protein)
Unique Ligands	CL

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1D09 \| pdb_00001d09	Download File View File

ASPARTATE TRANSCARBAMOYLASE COMPLEXED WITH N-PHOSPHONACETYL-L-ASPARTATE (PALA)

Jin, L., Stec, B., Lipscomb, W.N., Kantrowitz, E.R.

(1999) Proteins 37: 729-742

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN (protein) ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN (protein)
Unique Ligands	PAL, ZN

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1D4V \| pdb_00001d4v	Download File View File

Crystal structure of trail-DR5 complex

Mongkolsapaya, J., Grimes, J.M., Stuart, D.I., Jones, E.Y., Screaton, G.R.

(1999) Nat Struct Biol 6: 1048-1053

Released	1999-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DEATH RECEPTOR 5 (protein) TNF-RELATED APOPTOSIS INDUCING LIGAND (protein)

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1DO2 \| pdb_00001do2	Download File View File

TRIGONAL CRYSTAL FORM OF HEAT SHOCK LOCUS U (HSLU) FROM ESCHERICHIA COLI

Bochtler, M., Hartmann, C., Song, H.K., Bourenkov, G.P., Bartunik, H.D.

(2000) Nature 403: 800-805

Released	2000-02-18
Method	X-RAY DIFFRACTION 4 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (HEAT SHOCK LOCUS U) (protein)
Unique Ligands	ANP

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1EO8 \| pdb_00001eo8	Download File View File

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY

Fleury, D., Gigant, B., Daniels, R.S., Skehel, J.J., Knossow, M., Bizebard, T.

(2000) Proteins 40: 572-578

Released	2000-04-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Influenza A virus (A/X-31(H3N2)) Mus musculus
Macromolecule	ANTIBODY (HEAVY CHAIN) (protein) ANTIBODY (LIGHT CHAIN) (protein) HEMAGGLUTININ (HA1 CHAIN) (protein) HEMAGGLUTININ (HA2 CHAIN) (protein)
Unique Ligands	NAG
Unique branched monosaccharides	MAN, NAG

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1ERI \| pdb_00001eri	Download File View File

X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE

Kim, Y., Grable, J.C., Love, R., Greene, P.J., Rosenberg, J.M.

(1990) Science 249: 1307-1309

Released	1995-02-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (ECO RI ENDONUCLEASE (E.C.3.1.21.4)) (protein) DNA (5'-D(TPCPGPCPGPAPAPTPTPCPGPCP*G)-3') (nucleic acid)

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1F1B \| pdb_00001f1b	Download File View File

CRYSTAL STRUCTURE OF E. COLI ASPARTATE TRANSCARBAMOYLASE P268A MUTANT IN THE R-STATE IN THE PRESENCE OF N-PHOSPHONACETYL-L-ASPARTATE

Jin, L., Stec, B., Kantrowitz, E.R.

(2000) Biochemistry 39: 8058-8066

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC CHAIN (protein) ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN (protein)
Unique Ligands	PAL, ZN

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1FAV \| pdb_00001fav	Download File View File

THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR IN COMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE

Zhou, G., Ferrer, M., Chopra, R., Strassmaier, T., Weissenhorn, W., Skehel, J.J., Oprian, D., Schreiber, S.L., Harrison, S.C., Wiley, D.C.

(2000) Bioorg Med Chem 8: 2219-2227

Released	2000-08-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) Saccharomyces cerevisiae S288C
Macromolecule	HIV-1 ENVELOPE PROTEIN CHIMERA (protein) PROTEIN (TRANSMEMBRANE GLYCOPROTEIN) (protein)

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1FLL \| pdb_00001fll	Download File View File

MOLECULAR BASIS FOR CD40 SIGNALING MEDIATED BY TRAF3

Ni, C.-Z., Welsh, K., Leo, E., Chiou, C.-K., Wu, H., Reed, J.C., Ely, K.R.

(2000) Proc Natl Acad Sci U S A 97: 10395-10399

Released	2000-10-18
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	B-CELL SURFACE ANTIGEN CD40 (protein) TNF RECEPTOR ASSOCIATED FACTOR 3 (protein)

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1G4A \| pdb_00001g4a	Download File View File

CRYSTAL STRUCTURES OF THE HSLVU PEPTIDASE-ATPASE COMPLEX REVEAL AN ATP-DEPENDENT PROTEOLYSIS MECHANISM

Wang, J., Song, J.J., Franklin, M.C., Kamtekar, S., Im, Y.J., Rho, S.H., Seong, I.S., Lee, C.S., Chung, C.H., Eom, S.H.

(2001) Structure 9: 177-184

Released	2001-02-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU (protein) ATP-DEPENDENT PROTEASE HSLV (protein)
Unique Ligands	DAT

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1G4B \| pdb_00001g4b	Download File View File

CRYSTAL STRUCTURES OF THE HSLVU PEPTIDASE-ATPASE COMPLEX REVEAL AN ATP-DEPENDENT PROTEOLYSIS MECHANISM

Wang, J., Song, J.J., Franklin, M.C., Kamtekar, S., Im, Y.J., Rho, S.H., Seong, I.S., Lee, C.S., Chung, C.H., Eom, S.H.

(2001) Structure 9: 177-184

Released	2001-02-21
Method	X-RAY DIFFRACTION 7 Å
Organisms	Escherichia coli
Macromolecule	ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU (protein) ATP-DEPENDENT PROTEASE HSLV (protein)

1 to 25 of 714 Structures

Page 1 of 29

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A2N | pdb_00001a2n

1ACM | pdb_00001acm

1AF5 | pdb_00001af5

1AIK | pdb_00001aik

1AT1 | pdb_00001at1

1B66 | pdb_00001b66

1B6Z | pdb_00001b6z

1BM2 | pdb_00001bm2

1BT9 | pdb_00001bt9

1CB0 | pdb_00001cb0

1CG6 | pdb_00001cg6

1CKQ | pdb_00001ckq

1CL8 | pdb_00001cl8

1COI | pdb_00001coi

1CZQ | pdb_00001czq

1D09 | pdb_00001d09

1D4V | pdb_00001d4v

1DO2 | pdb_00001do2

1EO8 | pdb_00001eo8

1ERI | pdb_00001eri

1F1B | pdb_00001f1b

1FAV | pdb_00001fav

1FLL | pdb_00001fll

1G4A | pdb_00001g4a

1G4B | pdb_00001g4b