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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 31"

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Search Summary

This query matches 1,194 Structures.

Refinements

Structure Determination Methodology

experimental (1,194)

Scientific Name of Source Organism

	Homo sapiens (318)
	Chikungunya virus (142)
	Human immunodeficiency virus 1 (64)
	Mus musculus (45)
	synthetic construct (42)
	Escherichia coli (28)
	Human immunodeficiency virus (20)
	Mycobacterium tuberculosis H37Rv (19)
	Saccharomyces cerevisiae (16)
	Escherichia coli K-12 (15)

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Taxonomy

	Eukaryota (523)
	Bacteria (341)
	Riboviria (275)
	Archaea (44)
	other sequences (42)
	Duplodnaviria (7)
	Eukaryota (eukaryotes) (7)
	Varidnaviria (7)
	Monodnaviria (5)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (1,193)
	ELECTRON CRYSTALLOGRAPHY (1)
	EPR (1)

Polymer Entity Type

	Protein (1,180)
	DNA (57)
	RNA (19)
	NA-hybrid (2)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (141)
	1.5 - 2.0 (383)
	2.0 - 2.5 (346)
	2.5 - 3.0 (206)
	3.0 - 3.5 (89)
	3.5 - 4.0 (16)
	4.0 - 4.5 (9)
	> 4.5 (2)

Release Date

	1980 - 1984 (1)
	1990 - 1994 (4)
	1995 - 1999 (19)
	2000 - 2004 (81)
	2005 - 2009 (146)
	2010 - 2014 (337)
	2015 - 2019 (241)
	2020 - 2024 (356)
	2025 - 2029 (9)

Enzyme Classification Name

	Hydrolases (333)
	Transferases (233)
	Oxidoreductases (64)
	Lyases (32)
	Ligases (17)
	Isomerases (18)
	Translocases (3)

Membrane Protein Annotation

	OPM (7)
	PDBTM (7)
	MemProtMD (6)
	mpstruc (2)

Symmetry Type

	Asymmetric (676)
	Cyclic (460)
	Dihedral (71)
	Helical (4)
	Tetrahedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (248)
	All beta proteins (96)
	Alpha and beta proteins (a+b) (108)
	All alpha proteins (98)
	Artifacts (69)
	Small proteins (13)
	Multi-domain proteins (alpha and beta) (15)
	Coiled coil proteins (3)
	Membrane and cell surface proteins and peptides (3)
	Peptides (1)

AllSelected

1 to 25 of 1,194 Structures

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198D \| pdb_0000198d	Download File View File

A TRIGONAL FORM OF THE IDARUBICIN-D(CGATCG) COMPLEX: CRYSTAL AND MOLECULAR STRUCTURE AT 2.0 ANGSTROMS RESOLUTION

Dautant, A., Langlois D'Estaintot, B., Gallois, B., Brown, T., Hunter, W.N.

(1995) Nucleic Acids Res 23: 1710-1716

Released	1995-03-15
Method	X-RAY DIFFRACTION 1.97 Å
Macromolecule	DNA (5'-D(CPGPAPTPCPG)-3') (nucleic acid)
Unique Ligands	DM5, SPM

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1AB5 \| pdb_00001ab5	Download File View File

STRUCTURE OF CHEY MUTANT F14N, V21T

Wilcock, D., Pisabarro, M.T., Lopez-Hernandez, E., Serrano, L., Coll, M.

(1998) Acta Crystallogr D Biol Crystallogr 54: 378-385

Released	1998-02-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	CHEY (protein)

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1AB6 \| pdb_00001ab6	Download File View File

STRUCTURE OF CHEY MUTANT F14N, V86T

Wilcock, D., Pisabarro, M.T., Lopez-Hernandez, E., Serranno, L., Coll, M.

(1998) Acta Crystallogr D Biol Crystallogr 54: 378-385

Released	1998-02-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	CHEMOTAXIS PROTEIN CHEY (protein)

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1B0E \| pdb_00001b0e	Download File View File

CRYSTAL STRUCTURE OF PORCINE PANCREATIC ELASTASE WITH MDL 101,146

Schreuder, H.A., Metz, W.A., Peet, N.P., Pelton, J.T., Tardif, C.

(1998) J Med Chem 41: 2461-2480

Released	1998-11-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sus scrofa
Macromolecule	PROTEIN (ELASTASE) (protein)
Unique Ligands	CA, SEI

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1CVX \| pdb_00001cvx	Download File View File

CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYHPPYBETADP)2 BOUND TO B-DNA DECAMER CCAGATCTGG

Kielkopf, C.L., Bremer, R.E., White, S., Baird, E.E., Dervan, P.B., Rees, D.C.

(2000) J Mol Biology 295: 557-567

Released	2000-01-15
Method	X-RAY DIFFRACTION 2.27 Å
Macromolecule	5'-D(CPCPAPGPAPTPCPTPGPG)-3' (nucleic acid)
Unique Ligands	HP2

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1EJH \| pdb_00001ejh	Download File View File

EIF4E/EIF4G PEPTIDE/7-METHYL-GDP

Marcotrigiano, J., Gingras, A.-C., Sonenberg, N., Burley, S.K.

(1999) Mol Cell 3: 707-716

Released	2000-03-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	EUKARYOTIC INITIATION FACTOR 4E (protein) EUKARYOTIC INITIATION FACTOR 4GII (protein)
Unique Ligands	M7G

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1EM6 \| pdb_00001em6	Download File View File

HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH GLCNAC AND CP-526,423

Rath, V.L., Ammirati, M., Danley, D.E., Ekstrom, J.L., Hynes, T.R., Olson, T.V., Hoover, D.J.

(2000) Chem Biol 7: 677-682

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	LIVER GLYCOGEN PHOSPHORYLASE (protein)
Unique Ligands	CP4, MPD, NBG, PLP

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1ERJ \| pdb_00001erj	Download File View File

CRYSTAL STRUCTURE OF THE C-TERMINAL WD40 DOMAIN OF TUP1

Sprague, E.R., Redd, M.J., Johnson, A.D., Wolberger, C.

(2000) EMBO J 19: 3016-3027

Released	2000-07-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TRANSCRIPTIONAL REPRESSOR TUP1 (protein)

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1EX6 \| pdb_00001ex6	Download File View File

CRYSTAL STRUCTURE OF UNLIGANDED FORM OF GUANYLATE KINASE FROM YEAST

Blaszczyk, J., Ji, X.

(2001) J Mol Biology 307: 247-257

Released	2001-03-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GUANYLATE KINASE (protein)

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1EXV \| pdb_00001exv	Download File View File

HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH GLCNAC AND CP-403,700

Rath, V.L., Ammirati, M., Danley, D.E., Ekstrom, J.L., Hynes, T.R., Olson, T.V., Hoover, D.J.

(2000) Chem Biol 7: 677-682

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	LIVER GLYCOGEN PHOSPHORYLASE (protein)
Unique Ligands	700, MPD, NBG, PLP

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1F2I \| pdb_00001f2i	Download File View File

COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA

Wang, B.S., Grant, R.A., Pabo, C.O.

(2001) Nat Struct Biol 8: 589-593

Released	2001-09-14
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12 (protein) 5'-D(APTPGPGPGPCPGPCPGPCPCPCPAPT)-3' (nucleic acid)
Unique Ligands	ZN

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1FC0 \| pdb_00001fc0	Download File View File

HUMAN LIVER GLYCOGEN PHOSPHORYLASE COMPLEXED WITH N-ACETYL-BETA-D-GLUCOPYRANOSYLAMINE

Rath, V.L., Ammirati, M., LeMotte, P.K., Fennell, K.F., Mansour, M.M., Danley, D.E., Hynes, T.R., Schulte, G.K., Wasilko, D.J., Pandit, J.

(2000) Mol Cell 6: 139-148

Released	2000-08-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	GLYCOGEN PHOSPHORYLASE, LIVER FORM (protein)
Unique Ligands	NBG, PLP

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1FHF \| pdb_00001fhf	Download File View File

THE STRUCTURE OF SOYBEAN PEROXIDASE

Henriksen, A., Mirza, O., Indiana, C., Welinder, K., Teilum, K., Gajhede, M.

(2001) Protein Sci 10: 108-115

Released	2001-02-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Glycine max
Macromolecule	SEED COAT PEROXIDASE (protein)
Unique Ligands	CA, HEM, TRS

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1FNN \| pdb_00001fnn	Download File View File

CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM

Liu, J., Smith, C.L., DeRyckere, D., DeAngelis, K., Martin, G.S., Berger, J.M.

(2000) Mol Cell 6: 637-648

Released	2000-10-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	CELL DIVISION CONTROL PROTEIN 6 (protein)
Unique Ligands	ADP, MG

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1FX9 \| pdb_00001fx9	Download File View File

CARBOXYLIC ESTER HYDROLASE COMPLEX (DIMERIC PLA2 + MJ33 INHIBITOR + SULPHATE IONS)

Pan, Y.H., Epstein, T.M., Jain, M.K., Bahnson, B.J.

(2001) Biochemistry 40: 609-617

Released	2001-09-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sus scrofa
Macromolecule	PHOSPHOLIPASE A2, MAJOR ISOENZYME (protein)
Unique Ligands	CA, MJI, SO4

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1FXF \| pdb_00001fxf	Download File View File

CARBOXYLIC ESTER HYDROLASE COMPLEX (DIMERIC PLA2 + MJ33 INHIBITOR + PHOSPHATE IONS)

Pan, Y.H., Epstein, T.M., Jain, M.K., Bahnson, B.J.

(2001) Biochemistry 40: 609-617

Released	2001-09-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Sus scrofa
Macromolecule	PHOSPHOLIPASE A2, MAJOR ISOENZYME (protein)
Unique Ligands	CA, MJI, PO4

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1G57 \| pdb_00001g57	Download File View File

CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE

Liao, D.-I., Calabrese, J.C., Wawrzak, Z., Viitanen, P.V., Jordan, D.B.

(2001) Structure 9: 11-18

Released	2001-04-30
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE (protein)
Unique Ligands	CS

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1G58 \| pdb_00001g58	Download File View File

CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE GOLD DERIVATIVE

Liao, D.-I., Calabrese, J.C., Wawrzak, Z., Viitanen, P.V., Jordan, D.B.

(2001) Structure 9: 11-18

Released	2001-04-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli
Macromolecule	3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE (protein)
Unique Ligands	AU

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1G9X \| pdb_00001g9x	Download File View File

CHARACTERIZATION OF THE TWINNING STRUCTURE OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER

Yuan, Y.-R., Hunt, J.F.

(2003) Acta Crystallogr D Biol Crystallogr 59: 225-238

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN (protein)
Unique Ligands	ADP, MG, MMC

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1GEC \| pdb_00001gec	Download File View File

GLYCYL ENDOPEPTIDASE-COMPLEX WITH BENZYLOXYCARBONYL-LEUCINE-VALINE-GLYCINE-METHYLENE COVALENTLY BOUND TO CYSTEINE 25

Ohara, B.P., Hemmings, A.M., Buttle, D.J., Pearl, L.H.

(1995) Biochemistry 34: 13190-13195

Released	1995-12-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Carica papaya
Macromolecule	BENZYLOXYCARBONYL-LEUCINE-VALINE-GLYCINE-METHYLENE INHIBITOR (protein) GLYCYL ENDOPEPTIDASE (protein)

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1GQA \| pdb_00001gqa	Download File View File

Cytochrome c' from Rhodobacter Spheriodes

Kantardjieff, K.A., Rupp, B.

(2003) J Chem Crystallogr 33: 413

Released	2002-12-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC

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1GV8 \| pdb_00001gv8	Download File View File

18 kDa fragment of N-II domain of duck ovotransferrin

Kuser, P., Hall, D.R., Haw, M.L., Neu, M., Lindley, P.F.

(2002) Acta Crystallogr D Biol Crystallogr 58: 777

Released	2002-02-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Anas platyrhynchos
Macromolecule	OVOTRANSFERRIN (protein)
Unique Ligands	CO3, FE, GLY

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1GVC \| pdb_00001gvc	Download File View File

18kDa N-II domain fragment of duck ovotransferrin + NTA

Kuser, P., Hall, D.R., Haw, M.L., Neu, M., Lindley, P.F.

(2002) Acta Crystallogr D Biol Crystallogr 58: 777

Released	2002-02-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Anas platyrhynchos
Macromolecule	OVOTRANSFERRIN (protein)
Unique Ligands	CO3, FE, NTA

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1GYO \| pdb_00001gyo	Download File View File

Crystal structure of the di-tetraheme cytochrome c3 from Desulfovibrio gigas at 1.2 Angstrom resolution

Aragao, D., Frazao, C., Sieker, L., Sheldrick, G.M., Legall, J., Carrondo, M.A.

(2003) Acta Crystallogr D Biol Crystallogr 59: 644

Released	2002-05-24
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	CYTOCHROME C3, A DIMERIC CLASS III C-TYPE CYTOCHROME (protein)
Unique Ligands	GOL, HEC

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1GZM \| pdb_00001gzm	Download File View File

Structure of Bovine Rhodopsin in a Trigonal Crystal Form

Li, J.

(2004) J Mol Biology 343: 1409

Released	2003-11-20
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Bos taurus
Macromolecule	RHODOPSIN (protein)
Unique Ligands	C8E, LDA, PEF, PLM, RET, ZN
Unique branched monosaccharides	BMA, NAG

1 to 25 of 1,194 Structures

Page 1 of 48

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

198D | pdb_0000198d

1AB5 | pdb_00001ab5

1AB6 | pdb_00001ab6

1B0E | pdb_00001b0e

1CVX | pdb_00001cvx

1EJH | pdb_00001ejh

1EM6 | pdb_00001em6

1ERJ | pdb_00001erj

1EX6 | pdb_00001ex6

1EXV | pdb_00001exv

1F2I | pdb_00001f2i

1FC0 | pdb_00001fc0

1FHF | pdb_00001fhf

1FNN | pdb_00001fnn

1FX9 | pdb_00001fx9

1FXF | pdb_00001fxf

1G57 | pdb_00001g57

1G58 | pdb_00001g58

1G9X | pdb_00001g9x

1GEC | pdb_00001gec

1GQA | pdb_00001gqa

1GV8 | pdb_00001gv8

1GVC | pdb_00001gvc

1GYO | pdb_00001gyo

1GZM | pdb_00001gzm