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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 31 1 2"

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Search Summary

This query matches 202 Structures.

Refinements

Structure Determination Methodology

experimental (202)

Scientific Name of Source Organism

	Homo sapiens (83)
	Pyrococcus horikoshii OT3 (12)
	Escherichia coli (8)
	Mus musculus (7)
	synthetic construct (7)
	Moritella marina (6)
	Bacillus subtilis (5)
	Bos taurus (3)
	Methanococcus maripaludis (3)
	Rhodococcus erythropolis (3)

More...

Taxonomy

	Eukaryota (118)
	Bacteria (62)
	Archaea (21)
	Riboviria (7)
	other sequences (7)
	Duplodnaviria (1)
	Varidnaviria (1)
	unclassified bacterial viruses (1)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (202)

Polymer Entity Type

	Protein (202)
	RNA (10)
	DNA (9)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (3)
	1.5 - 2.0 (31)
	2.0 - 2.5 (81)
	2.5 - 3.0 (46)
	3.0 - 3.5 (34)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (5)
	2000 - 2004 (18)
	2005 - 2009 (20)
	2010 - 2014 (44)
	2015 - 2019 (64)
	2020 - 2024 (47)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (63)
	Hydrolases (21)
	Oxidoreductases (13)
	Isomerases (13)
	Ligases (4)
	Translocases (4)
	Lyases (3)

Membrane Protein Annotation

	MemProtMD (4)
	OPM (4)
	PDBTM (4)
	mpstruc (3)

Symmetry Type

	Asymmetric (99)
	Cyclic (84)
	Dihedral (29)

SCOP Classification

	Alpha and beta proteins (a/b) (31)
	All beta proteins (19)
	All alpha proteins (17)
	Alpha and beta proteins (a+b) (28)
	Artifacts (17)
	Multi-domain proteins (alpha and beta) (2)
	Membrane and cell surface proteins and peptides (1)
	Small proteins (1)

AllSelected

1 to 25 of 202 Structures

Page 1 of 9

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1ATJ \| pdb_00001atj	Download File View File

RECOMBINANT HORSERADISH PEROXIDASE C1A

Gajhede, M., Schuller, D.J., Henriksen, A., Smith, A.T., Poulos, T.L.

(1997) Nat Struct Biol 4: 1032-1038

Released	1998-02-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Armoracia rusticana
Macromolecule	PEROXIDASE C1A (protein)
Unique Ligands	CA, HEM

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1BS0 \| pdb_00001bs0	Download File View File

PLP-DEPENDENT ACYL-COA SYNTHASE

Alexeev, D., Alexeeva, M., Baxter, R.L., Campopiano, D.J., Webster, S.P., Sawyer, L.

(1998) J Mol Biology 284: 401-419

Released	1999-08-27
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (8-AMINO-7-OXONANOATE SYNTHASE) (protein)
Unique Ligands	SO4

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1CG5 \| pdb_00001cg5	Download File View File

DEOXY FORM HEMOGLOBIN FROM DASYATIS AKAJEI

Chong, K.T., Morimoto, H.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1291-1300

Released	1999-04-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Hemitrygon akajei
Macromolecule	PROTEIN (HEMOGLOBIN) (protein)
Unique Ligands	HEM

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1CNO \| pdb_00001cno	Download File View File

STRUCTURE OF PSEUDOMONAS NAUTICA CYTOCHROME C552, BY MAD METHOD

Brown, K., Nurizzo, D., Cambillau, C.

(1999) J Mol Biology 289: 1017-1028

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Marinobacter nauticus
Macromolecule	CYTOCHROME C552 (protein)
Unique Ligands	GOL, HEC

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1DJ9 \| pdb_00001dj9	Download File View File

CRYSTAL STRUCTURE OF 8-AMINO-7-OXONANOATE SYNTHASE (OR 7-KETO-8AMINIPELARGONATE OR KAPA SYNTHASE) COMPLEXED WITH PLP AND THE PRODUCT 8(S)-AMINO-7-OXONANONOATE (OR KAPA). THE ENZYME OF BIOTIN BIOSYNTHETIC PATHWAY.

Webster, S.P., Alexeev, D., Campopiano, D.J., Watt, R.M., Alexeeva, M., Sawyer, L., Baxter, R.L.

(2000) Biochemistry 39: 516-528

Released	2000-12-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	8-AMINO-7-OXONONANOATE SYNTHASE (protein)
Unique Ligands	KAM, MG, SO4

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1DJE \| pdb_00001dje	Download File View File

CRYSTAL STRUCTURE OF THE PLP-BOUND FORM OF 8-AMINO-7-OXONANOATE SYNTHASE

Webster, S.P., Alexeev, D., Campopiano, D.J., Watt, R.M., Alexeeva, M., Sawyer, L., Baxter, R.L.

(2000) Biochemistry 39: 516-528

Released	2000-12-04
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Escherichia coli
Macromolecule	8-AMINO-7-OXONANOATE SYNTHASE (protein)
Unique Ligands	PLP, SO4

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1E5E \| pdb_00001e5e	Download File View File

METHIONINE GAMMA-LYASE (MGL) FROM TRICHOMONAS VAGINALIS IN COMPLEX WITH PROPARGYLGLYCINE

Goodall, G., Mottram, J.C., Coombs, G.H., Lapthorn, A.J.

To be published

Released	2001-07-19
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Trichomonas vaginalis G3
Macromolecule	METHIONINE GAMMA-LYASE (protein)
Unique Ligands	GOL, PPJ, SO4

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1E5F \| pdb_00001e5f	Download File View File

METHIONINE GAMMA-LYASE (MGL) FROM TRICHOMONAS VAGINALIS

Goodall, G., Mottram, J.C., Coombs, G.H., Lapthorn, A.J.

To be published

Released	2001-07-19
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Trichomonas vaginalis G3
Macromolecule	METHIONINE GAMMA-LYASE (protein)
Unique Ligands	GOL, PLP, SO4

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1FEU \| pdb_00001feu	Download File View File

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA.

Fedorov, R.V., Meshcheryakov, V.A., Gongadze, G.M., Fomenkova, N.P., Nevskaya, N.A., Selmer, M., Laurberg, M., Kristensen, O., Al-Karadaghi, S., Liljas, A., Garber, M.B., Nikonov, S.V.

(2001) Acta Crystallogr D Biol Crystallogr 57: 968-976

Released	2001-06-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	50S RIBOSOMAL PROTEIN L25 (protein) 19 NT FRAGMENT OF 5S RRNA (nucleic acid) 21 NT FRAGMENT OF 5S RRNA (nucleic acid)
Unique Ligands	CD, MG

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1HLV \| pdb_00001hlv	Download File View File

CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA

Tanaka, Y., Nureki, O., Kurumizaka, H., Fukai, S., Kawaguchi, S., Ikuta, M., Iwahara, J., Okazaki, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2001) EMBO J 20: 6612-6618

Released	2002-01-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	MAJOR CENTROMERE AUTOANTIGEN B (protein) CENP-B BOX DNA (nucleic acid)

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1I0E \| pdb_00001i0e	Download File View File

CRYSTAL STRUCTURE OF CREATINE KINASE FROM HUMAN MUSCLE

Shen, Y.-Q., Tang, L., Zhou, H.-M., Lin, Z.-J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1196-1200

Released	2003-04-01
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	CREATINE KINASE,M CHAIN (protein)

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1KOL \| pdb_00001kol	Download File View File

Crystal structure of formaldehyde dehydrogenase

Tanaka, N., Kusakabe, Y., Ito, K., Yoshimoto, T., Nakamura, K.T.

(2002) J Mol Biology 324: 519-533

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pseudomonas putida
Macromolecule	formaldehyde dehydrogenase (protein)
Unique Ligands	NAD, SO4, ZN

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1M6N \| pdb_00001m6n	Download File View File

Crystal structure of the SecA translocation ATPase from Bacillus subtilis

Hunt, J.F., Weinkauf, S., Henry, L., Fak, J.J., McNicholas, P., Oliver, D.B., Deisenhofer, J.

(2002) Science 297: 2018-2026

Released	2002-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus subtilis
Macromolecule	Preprotein translocase secA (protein)
Unique Ligands	SO4

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1M74 \| pdb_00001m74	Download File View File

Crystal structure of Mg-ADP-bound SecA from Bacillus subtilis

Hunt, J.F., Weinkauf, S., Henry, L., Fak, J.J., McNicholas, P., Oliver, D.B., Deisenhofer, J.

(2002) Science 297: 2018-2026

Released	2002-09-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacillus subtilis
Macromolecule	Preprotein translocase secA (protein)
Unique Ligands	ADP, MG, SO4

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1MNV \| pdb_00001mnv	Download File View File

Actinomycin D binding to ATGCTGCAT

Hou, M.-H., Robinson, H., Gao, Y.-G., Wang, A.H.-J.

(2002) Nucleic Acids Res 30: 4910

Released	2002-11-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) 5'-D(APTPGPCPTPGPCPAP*T)-3' (nucleic acid)

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1MYW \| pdb_00001myw	Download File View File

CRYSTAL STRUCTURE OF A YELLOW FLUORESCENT PROTEIN WITH IMPROVED MATURATION AND REDUCED ENVIRONMENTAL SENSITIVITY

Rekas, A., Alattia, J.R., Nagai, T., Miyawaki, A., Ikura, M.

(2002) J Biological Chem 277: 50573-50578

Released	2003-01-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aequorea victoria
Macromolecule	Green fluorescent protein (protein)

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1N00 \| pdb_00001n00	Download File View File

Annexin Gh1 from cotton

Hofmann, A., Delmer, D.P., Wlodawer, A.

(2003) Eur J Biochem 270: 2557-2564

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gossypium hirsutum
Macromolecule	annexin Gh1 (protein)
Unique Ligands	SO4

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1OQ9 \| pdb_00001oq9	Download File View File

The Crystal Structure of the Complex between Stearoyl Acyl Carrier Protein Desaturase from Ricinus Communis (Castor Bean) and Acetate.

Moche, M., Shanklin, J., Ghoshal, A.K., Lindqvist, Y.

(2003) J Biological Chem 278: 25072-25080

Released	2003-05-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Ricinus communis
Macromolecule	Acyl-[acyl-carrier protein] desaturase (protein)
Unique Ligands	ACT, FE

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1P8Z \| pdb_00001p8z	Download File View File

Complex Between Rabbit Muscle alpha-Actin: Human Gelsolin Residues Val26-Glu156

Irobi, E., Burtnick, L.D., Robinson, R.C.

(2003) FEBS Lett 552: 86-90

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein) Gelsolin precursor, plasma (protein)
Unique Ligands	ATP, CA, CD

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1PPO \| pdb_00001ppo	Download File View File

DETERMINATION OF THE STRUCTURE OF PAPAYA PROTEASE OMEGA

Pickersgill, R.W., Rizkallah, P.J., Harris, G.W., Goodenough, P.W.

(1991) Acta Crystallogr B 47: 766-771

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Carica papaya
Macromolecule	PROTEASE OMEGA (protein)
Unique Ligands	HG

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1SRU \| pdb_00001sru	Download File View File

Crystal structure of full length E. coli SSB protein

Savvides, S.N., Raghunathan, S., Fuetterer, K., Kozlov, A.G., Lohman, T.M., Waksman, G.

(2004) Protein Sci 13: 1942-1947

Released	2004-08-03
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	Single-strand binding protein (protein)

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1T05 \| pdb_00001t05	Download File View File

HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate

Tuske, S., Sarafianos, S.G., Ding, J., Arnold, E.

(2004) Nat Struct Mol Biol 11: 469-474

Released	2004-05-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein) oligonucleotide primer (nucleic acid) oligonucleotide template (nucleic acid)
Unique Ligands	GOL, MG, TNV

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1ULD \| pdb_00001uld	Download File View File

CGL2 in complex with blood group H type II

Walser, P.J., Haebel, P.W., Kuenzler, M., Kues, U., Aebi, M., Ban, N.

(2004) Structure 12: 689-702

Released	2004-04-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Coprinopsis cinerea
Macromolecule	galectin-2 (protein)
Unique branched monosaccharides	FUC, GAL, NAG