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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 41 3 2"

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Search Summary

This query matches 316 Structures.

Refinements

Structure Determination Methodology

experimental (316)

Scientific Name of Source Organism

	Homo sapiens (44)
	Panus similis (37)
	Human respiratory syncytial virus A2 (30)
	Saccharomyces cerevisiae (18)
	Rattus norvegicus (17)
	Escherichia coli (13)
	human respiratory syncytial virus (13)
	synthetic construct (13)
	Mus musculus (7)
	Trichomonas vaginalis (7)

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Taxonomy

	Eukaryota (161)
	Bacteria (90)
	Riboviria (58)
	other sequences (13)
	Duplodnaviria (8)
	Archaea (1)
	Eukaryota (eukaryotes) (1)
	Riboviria (RNA viruses and viroids) (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (316)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (313)
	DNA (9)
	RNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (79)
	2.0 - 2.5 (84)
	2.5 - 3.0 (89)
	3.0 - 3.5 (34)
	3.5 - 4.0 (11)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (5)
	2000 - 2004 (30)
	2005 - 2009 (42)
	2010 - 2014 (46)
	2015 - 2019 (98)
	2020 - 2024 (79)
	2025 - 2029 (13)

Enzyme Classification Name

	Oxidoreductases (52)
	Transferases (39)
	Hydrolases (32)
	Isomerases (9)
	Lyases (5)
	Ligases (2)

Membrane Protein Annotation

	OPM (4)
	PDBTM (3)
	MemProtMD (2)
	mpstruc (2)

Symmetry Type

	Cyclic (155)
	Asymmetric (140)
	Dihedral (40)

SCOP Classification

	All beta proteins (34)
	Alpha and beta proteins (a/b) (32)
	Coiled coil proteins (19)
	Alpha and beta proteins (a+b) (19)
	Artifacts (17)
	All alpha proteins (9)
	Small proteins (4)

AllSelected

1 to 25 of 316 Structures

Page 1 of 13

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1BE9 \| pdb_00001be9	Download File View File

THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95 IN COMPLEX WITH A C-TERMINAL PEPTIDE DERIVED FROM CRIPT.

Doyle, D.A., Lee, A., Lewis, J., Kim, E., Sheng, M., Mackinnon, R.

(1996) Cell 85: 1067-1076

Released	1998-10-21
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Rattus norvegicus
Macromolecule	CRIPT (protein) PSD-95 (protein)

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1BFE \| pdb_00001bfe	Download File View File

THE THIRD PDZ DOMAIN FROM THE SYNAPTIC PROTEIN PSD-95

Doyle, D.A., Lee, A., Lewis, J., Kim, E., Sheng, M., Mackinnon, R.

(1996) Cell 85: 1067-1076

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	PSD-95 (protein)

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1CMK \| pdb_00001cmk	Download File View File

CRYSTAL STRUCTURES OF THE MYRISTYLATED CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE REVEAL OPEN AND CLOSED CONFORMATIONS

Zheng, J., Knighton, D.R., Xuong, N.-H., Taylor, S.S., Sowadski, J.M., Ten Eyck, L.F.

(1993) Protein Sci 2: 1559-1573

Released	1994-05-31
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	cAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT (protein) cAMP-dependent protein kinase inhibitor, alpha form (protein)
Unique Ligands	IOD, MYR

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1CTP \| pdb_00001ctp	Download File View File

STRUCTURE OF THE MAMMALIAN CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE AND AN INHIBITOR PEPTIDE DISPLAYS AN OPEN CONFORMATION

Karlsson, R., Zheng, J., Xuong, N.H., Taylor, S.S., Sowadski, J.M.

(1993) Acta Crystallogr D Biol Crystallogr 49: 381-388

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	cAMP-DEPENDENT PROTEIN KINASE (protein) cAMP-dependent protein kinase inhibitor, alpha form (protein)
Unique Ligands	MYR

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1DUC \| pdb_00001duc	Download File View File

EIAV DUTPASE DUDP/STRONTIUM COMPLEX

Dauter, Z., Persson, R., Rosengren, A.M., Nyman, P.O., Wilson, K.S., Cedergren-Zeppezauer, E.S.

(1999) J Mol Biology 285: 655-673

Released	1998-06-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Equine infectious anemia virus
Macromolecule	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (protein)
Unique Ligands	DUD, SR

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1FBV \| pdb_00001fbv	Download File View File

STRUCTURE OF A CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION IN UBIQUITIN-PROTEIN LIGASES

Zheng, N., Wang, P., Jeffrey, P.D., Pavletich, N.P.

(2000) Cell 102: 533-539

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCTION PROTEIN CBL (protein) UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 (protein) ZAP-70 PEPTIDE (protein)
Unique Ligands	SO4, ZN

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1H9H \| pdb_00001h9h	Download File View File

COMPLEX OF EETI-II WITH PORCINE TRYPSIN

Kraetzner, R., Wentzel, A., Kolmar, H., Uson, I.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1255

Released	2004-07-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Ecballium elaterium Sus scrofa
Macromolecule	TRYPSIN (protein) TRYPSIN INHIBITOR II (protein)
Unique Ligands	CA

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1K9B \| pdb_00001k9b	Download File View File

Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28 nm resolution. Structural peculiarities in a folded protein conformation

Voss, R.H., Ermler, U., Essen, L.O., Wenzl, G., Kim, Y.M., Flecker, P.

(1996) Eur J Biochem 242: 122-131

Released	2001-11-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Glycine max
Macromolecule	BOWMAN-BIRK TYPE PROTEINASE INHIBITOR (protein)

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1LXN \| pdb_00001lxn	Download File View File

X-RAY STRUCTURE OF MTH1187 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT272

Tao, X., Khayat, R., Christendat, D., Savchenko, A., Xu, X., Edwards, A., Arrowsmith, C.H., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2003) Proteins 52: 478-480

Released	2003-07-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	HYPOTHETICAL PROTEIN MTH1187 (protein)
Unique Ligands	SO4

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1O6B \| pdb_00001o6b	Download File View File

Crystal structure of phosphopantetheine adenylyltransferase with ADP

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ADP, CL, MG, PO4

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1OB2 \| pdb_00001ob2	Download File View File

E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA

Kristensen, O., Nissen, P., Nyborg, J.

To be published

Released	2004-05-27
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Escherichia coli BL21 Saccharomyces cerevisiae
Macromolecule	ELONGATION FACTOR TU (protein) TRANSFER-RNA, PHE (nucleic acid)
Unique Ligands	GNP, KIR, MG
Unique branched monosaccharides	FRU, GLC

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1PI2 \| pdb_00001pi2	Download File View File

REACTIVE SITES OF AN ANTICARCINOGENIC BOWMAN-BIRK PROTEINASE INHIBITOR ARE SIMILAR TO OTHER TRYPSIN INHIBITORS

Chen, P., Rose, J., Wang, B.C.

(1992) J Biological Chem 267: 1990-1994

Released	1992-04-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Glycine max
Macromolecule	BOWMAN-BIRK INHIBITOR (PI-II) (protein)

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1QHD \| pdb_00001qhd	Download File View File

CRYSTAL STRUCTURE OF VP6, THE MAJOR CAPSID PROTEIN OF GROUP A ROTAVIRUS

Mathieu, M., Petitpas, I., Rey, F.A.

(2001) EMBO J 20: 1485-1497

Released	2001-04-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bovine rotavirus strain RF
Macromolecule	VIRAL CAPSID VP6 (protein)
Unique Ligands	CA, CL, ZN

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1R6Y \| pdb_00001r6y	Download File View File

Crystal structure of YgiN from Escherichia coli

Adams, M.A., Jia, Z., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2005) J Biological Chem 280: 8358-8363

Released	2004-11-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Protein ygiN (protein)

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1S7I \| pdb_00001s7i	Download File View File

1.8 A Crystal Structure of a Protein of Unknown Function PA1349 from Pseudomonas aeruginosa

Zhang, R., Skarina, T., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-08-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	hypothetical protein PA1349 (protein)

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1TP3 \| pdb_00001tp3	Download File View File

PDZ3 domain of PSD-95 protein complexed with KKETPV peptide ligand

Saro, D., Martin, P., Vickrey, J.F., Griffin, A., Kovari, L.C., Spaller, M.R.

To be published

Released	2005-09-20
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Rattus norvegicus synthetic construct
Macromolecule	KKETPV peptide ligand (protein) Presynaptic density protein 95 (protein)

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1TP5 \| pdb_00001tp5	Download File View File

Crystal structure of PDZ3 domain of PSD-95 protein complexed with a peptide ligand KKETWV

Saro, D., Wawrzak, Z., Martin, P., Vickrey, J., Paredes, A., Kovari, L., Spaller, M.

To be published

Released	2005-09-20
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Rattus norvegicus
Macromolecule	LYS-LYS-GLU-THR-TRP-VAL peptide ligand (protein) Presynaptic density protein 95 (protein)