3D4S

Cholesterol bound form of human beta2 adrenergic receptor.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.230 

Starting Model: experimental
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This is version 1.8 of the entry. See complete history


Literature

A specific cholesterol binding site is established by the 2.8 A structure of the human beta2-adrenergic receptor.

Hanson, M.A.Cherezov, V.Griffith, M.T.Roth, C.B.Jaakola, V.P.Chien, E.Y.Velasquez, J.Kuhn, P.Stevens, R.C.

(2008) Structure 16: 897-905

  • DOI: https://doi.org/10.1016/j.str.2008.05.001
  • Primary Citation of Related Structures:  
    3D4S

  • PubMed Abstract: 

    The role of cholesterol in eukaryotic membrane protein function has been attributed primarily to an influence on membrane fluidity and curvature. We present the 2.8 A resolution crystal structure of a thermally stabilized human beta(2)-adrenergic receptor bound to cholesterol and the partial inverse agonist timolol. The receptors pack as monomers in an antiparallel association with two distinct cholesterol molecules bound per receptor, but not in the packing interface, thereby indicating a structurally relevant cholesterol-binding site between helices I, II, III, and IV. Thermal stability analysis using isothermal denaturation confirms that a cholesterol analog significantly enhances the stability of the receptor. A consensus motif is defined that predicts cholesterol binding for 44% of human class A receptors, suggesting that specific sterol binding is important to the structure and stability of other G protein-coupled receptors, and that this site may provide a target for therapeutic discovery.


  • Organizational Affiliation

    Department of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-2 adrenergic receptor/T4-lysozyme chimera490Homo sapiensTequatrovirus T4Mutation(s): 4 
Gene Names: ADRB2ADRB2RB2AR / E
EC: 3.2.1.17
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P07550 (Homo sapiens)
Explore P07550 
Go to UniProtKB:  P07550
PHAROS:  P07550
GTEx:  ENSG00000169252 
Find proteins for P00720 (Enterobacteria phage T4)
Explore P00720 
Go to UniProtKB:  P00720
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP00720P07550
Sequence Annotations
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  • Reference Sequence
Small Molecules
Binding Affinity Annotations 
IDSourceBinding Affinity
TIM BindingDB:  3D4S Kd: 0.24 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.230 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40α = 90
b = 75.7β = 90
c = 172.73γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Blu-Icedata collection
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2008-06-17
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2012-08-08
    Changes: Other
  • Version 1.3: 2015-06-24
    Changes: Database references, Source and taxonomy
  • Version 1.4: 2017-07-05
    Changes: Database references, Source and taxonomy
  • Version 1.5: 2018-01-24
    Changes: Structure summary
  • Version 1.6: 2021-10-20
    Changes: Database references, Derived calculations
  • Version 1.7: 2023-08-30
    Changes: Data collection, Refinement description
  • Version 1.8: 2024-10-30
    Changes: Structure summary