3OUR

Crystal structure of complex between EIIA and a novel pyruvate decarboxylase

• PDB DOI: https://doi.org/10.2210/pdb3OUR/pdb

• Classification: LYASE/TRANSFERASE
• Organism(s): Vibrio vulnificus CMCP6
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-09-15 Released: 2011-06-01 
• Deposition Author(s): Jeong, C.S., An, Y.J., Cha, S.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.248 
• R-Value Work: 0.201 
• R-Value Observed: 0.201 

Starting Models: experimental

Literature

FrsA functions as a cofactor-independent decarboxylase to control metabolic flux

Lee, K.J., Jeong, C.S., An, Y.J., Lee, H.J., Park, S.J., Seok, Y.J., Kim, P., Lee, J.H., Lee, K.H., Cha, S.S.

(2011) Nat Chem Biol 7: 434-436

• PubMed: 21623357 
• DOI: https://doi.org/10.1038/nchembio.589
• Primary Citation of Related Structures:  
  3MVE, 3OUR


• PubMed Abstract: 
  

  The interaction between fermentation-respiration switch (FrsA) protein and glucose-specific enzyme IIA(Glc) increases glucose fermentation under oxygen-limited conditions. We show that FrsA converts pyruvate to acetaldehyde and carbon dioxide in a cofactor-independent manner and that its pyruvate decarboxylation activity is enhanced by the dephosphorylated form of IIA(Glc) (d-IIA(Glc)). Crystal structures of FrsA and its complex with d-IIA(Glc) revealed residues required for catalysis as well as the structural basis for the activation by d-IIA(Glc).

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Organizational Affiliation: 

Department of Environmental Science, Hankuk University of Foreign Studies, Yongin, Republic of Korea.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 275.44 kDa 
• Atom Count: 17,650 
• Modelled Residue Count: 2,180 
• Deposited Residue Count: 2,472 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0255 protein VV1_0328	A, C, E, G	435	Vibrio vulnificus CMCP6	Mutation(s): 0  Gene Names: VV1_0328 EC: 3.1.1.1
UniProt
Find proteins for Q8DF91 (Vibrio vulnificus (strain CMCP6)) Explore Q8DF91  Go to UniProtKB:  Q8DF91

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphotransferase system IIA component	B, D, F, H	183	Vibrio vulnificus CMCP6	Mutation(s): 0  Gene Names: VV1_0212

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.248 
• R-Value Work: 0.201 
• R-Value Observed: 0.201 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 322.866	α = 90
b = 62.067	β = 110.8
c = 126.362	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
CCP4	model building
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CCP4	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-06-01 
Deposition Author(s): Jeong, C.S., An, Y.J., Cha, S.S.

Revision History  

• Version 1.0: 2011-06-01
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2013-10-09
  Changes: Database references
• Version 1.3: 2023-11-01
  Changes: Data collection, Database references, Refinement description