6FG0

Crystal structure of R. ruber ADH-A, mutant Y54G, F43T, L119Y, F282W

• PDB DOI: https://doi.org/10.2210/pdb6FG0/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Rhodococcus sp. M8
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2018-01-09 Released: 2018-12-19 
• Deposition Author(s): Dobritzsch, D., Maurer, D., Hamnevik, E., Enugala, T.R., Widersten, M.
• Funding Organization(s): Swedish Research Council

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.74 Å
• R-Value Free: 0.181 
• R-Value Work: 0.163 
• R-Value Observed: 0.164 

Starting Model: experimental

Literature

Stereo- and Regioselectivity in Catalyzed Transformation of a 1,2-Disubstituted Vicinal Diol and the Corresponding Diketone by Wild Type and Laboratory Evolved Alcohol Dehydrogenases

Maurer, D., Enugala, T.R., Hamnevik, E., Bauer, P., Luking, M., Hillier, H., Kamerlin, S.C.L., Dobritzsch, D., Widersten, M.

(2018) ACS Catal 8: 7526-7538

• DOI: https://doi.org/10.1021/acscatal.8b01762

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 147.32 kDa 
• Atom Count: 11,492 
• Modelled Residue Count: 1,383 
• Deposited Residue Count: 1,408 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase	A, B, C, D	352	Rhodococcus sp. M8	Mutation(s): 4  Gene Names: BKE56_025765

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD	G [auth A], J [auth B], M [auth C], P [auth D]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N
ZN	E [auth A], F [auth A], H [auth B], I [auth B], K [auth C], L [auth C], N [auth D], O [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.74 Å
• R-Value Free: 0.181 
• R-Value Work: 0.163 
• R-Value Observed: 0.164 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.706	α = 90
b = 105.463	β = 91.4
c = 108.977	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-12-19 
Deposition Author(s): Dobritzsch, D., Maurer, D., Hamnevik, E., Enugala, T.R., Widersten, M.

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Funding Organization	Location	Grant Number
Swedish Research Council	Sweden	--

Revision History  

• Version 1.0: 2018-12-19
  Type: Initial release
  
• Version 1.1: 2019-08-07
  Changes: Data collection, Database references
• Version 1.2: 2024-01-17
  Changes: Data collection, Database references, Refinement description