Download MendeleyStructure of PLP internal aldimine form of Sphingopyxis sp. MTA144 FumI protein
Campopiano, D.J., Serpico, A., Marles-Wright, J.To be published.
6HBS
Structure of PLP internal aldimine form of Sphingopyxis sp. MTA144 FumI protein
- PDB DOI: https://doi.org/10.2210/pdb6HBS/pdb
- Classification: TRANSFERASE
- Organism(s): Sphingopyxis macrogoltabida
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-08-13 Released: 2019-08-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.202
- R-Value Work: 0.169
- R-Value Observed: 0.171
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aminopentol aminotransferase | 440 | Sphingopyxis macrogoltabida | Mutation(s): 0 Gene Names: fumI EC: 2.6.1 |  | |
UniProt | |||||
Find proteins for D2D3B2 (Sphingopyxis macrogoltabida) Explore D2D3B2 Go to UniProtKB: D2D3B2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2D3B2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP (Subject of Investigation/LOI) Query on PLP | C [auth A], E [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| MG Query on MG | D [auth A], F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.202
- R-Value Work: 0.169
- R-Value Observed: 0.171
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.18 | α = 90 |
| b = 104.419 | β = 109.26 |
| c = 65.25 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2019-08-28 Deposition Author(s): Campopiano, D.J., Serpico, A., Marles-Wright, J.
Revision History (Full details and data files)
- Version 1.0: 2019-08-28
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Derived calculations, Refinement description
