Structure-based Optimization of Potent, Cell-Active Hydroxylactam Inhibitors of Lactate Dehydrogenase
Wei, B., Robarge, K., Labadie, S.S., Chen, J., Corson, L.B., DiPasquale, A., Eigenbrot, C., Ultsch, M.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
L-lactate dehydrogenase A chain | 332 | Homo sapiens | Mutation(s): 0  Gene Names: LDHA, PIG19 EC: 1.1.1.27 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00338 (Homo sapiens) Explore P00338  Go to UniProtKB:  P00338 | |||||
PHAROS:  P00338 GTEx:  ENSG00000134333  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00338 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAI Query on NAI | E [auth A], I [auth B], M [auth C], Q [auth D] | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE C21 H29 N7 O14 P2 BOPGDPNILDQYTO-NNYOXOHSSA-N | |||
D3S Query on D3S | H [auth A], P [auth C], R [auth D] | (6S)-3-[(2-chlorophenyl)sulfanyl]-4-hydroxy-6-(2-hydroxyphenyl)-6-phenyl-5,6-dihydro-2H-pyran-2-one C23 H17 Cl O4 S ARSBHTFMIZULEW-QHCPKHFHSA-N | |||
EPE Query on EPE | F [auth A], J [auth B], N [auth C] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
SO4 Query on SO4 | G [auth A], K [auth B], O [auth C], S [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
LAC Query on LAC | L [auth B] | LACTIC ACID C3 H6 O3 JVTAAEKCZFNVCJ-UWTATZPHSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 78.125 | α = 90 |
b = 80.968 | β = 98.33 |
c = 103.214 | γ = 90 |
Software Name | Purpose |
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SCALA | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |