1AOL | pdb_00001aol

FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN

• PDB DOI: https://doi.org/10.2210/pdb1AOL/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Friend murine leukemia virus
• Expression System: Trichoplusia ni
• Mutation(s): No 


• Deposited: 1997-07-08 Released: 1997-10-15 
• Deposition Author(s): Fass, D., Davey, R.A., Hamson, C.A., Kim, P.S., Cunningham, J.M., Berger, J.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.264 (Depositor) 
• R-Value Work: 
  0.223 (Depositor) 
• R-Value Observed: 
  0.223 (Depositor) 

Literature

Structure of a murine leukemia virus receptor-binding glycoprotein at 2.0 angstrom resolution.

Fass, D., Davey, R.A., Hamson, C.A., Kim, P.S., Cunningham, J.M., Berger, J.M.

(1997) Science 277: 1662-1666

• PubMed: 9287219 
• DOI: https://doi.org/10.1126/science.277.5332.1662
• Primary Citation of Related Structures:  
  1AOL


• PubMed Abstract: 
  

  An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus was determined to 2.0 angstrom resolution by x-ray crystallography. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus.

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Organizational Affiliation: 

Howard Hughes Medical Institute, Whitehead Institute for Biomedical Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 26.04 kDa 
• Atom Count: 2,007 
• Modelled Residue Count: 228 
• Deposited Residue Count: 228 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GP70	A	228	Friend murine leukemia virus	Mutation(s): 0
UniProt
Find proteins for P03390 (Friend murine leukemia virus (isolate 57)) Explore P03390  Go to UniProtKB:  P03390
Glycosylation
Glycosylation Sites: 2

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	B [auth A], C [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N
ZN	D [auth A], E [auth A], F [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.264 (Depositor) 
• R-Value Work:  0.223 (Depositor) 
• R-Value Observed: 0.223 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.3	α = 90
b = 68.4	β = 90
c = 80.4	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
X-PLOR	model building
X-PLOR	refinement
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 1997-10-15 
Deposition Author(s): Fass, D., Davey, R.A., Hamson, C.A., Kim, P.S., Cunningham, J.M., Berger, J.M.

Revision History  

• Version 1.0: 1997-10-15
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Non-polymer description, Version format compliance
• Version 1.3: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary
• Version 1.4: 2024-11-06
  Changes: Data collection, Database references, Structure summary