1NY6
Crystal structure of sigm54 activator (AAA+ ATPase) in the active state
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104150 | 3002834 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | RecA-like P-loop NTPases | 8037077 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | AtoC | e1ny6C1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
C | Sigma54_activat | e1ny6C2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
F | AtoC | e1ny6F1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
F | Sigma54_activat | e1ny6F2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
G | AtoC | e1ny6G1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
G | Sigma54_activat | e1ny6G2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
H | AtoC | e1ny6H1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
H | Sigma54_activat | e1ny6H2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
I | AtoC | e1ny6I1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
I | Sigma54_activat | e1ny6I2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
J | AtoC | e1ny6J1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
J | Sigma54_activat | e1ny6J2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
K | AtoC | e1ny6K1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
K | Sigma54_activat | e1ny6K2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
M | AtoC | e1ny6M1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
M | Sigma54_activat | e1ny6M2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
N | AtoC | e1ny6N1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
N | Sigma54_activat | e1ny6N2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
A | AtoC | e1ny6A1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
A | Sigma54_activat | e1ny6A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
B | AtoC | e1ny6B1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
B | Sigma54_activat | e1ny6B2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
D | AtoC | e1ny6D1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
D | Sigma54_activat | e1ny6D2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
E | AtoC | e1ny6E1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
E | Sigma54_activat | e1ny6E2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
L | AtoC | e1ny6L1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
L | Sigma54_activat | e1ny6L2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR011006 | CheY-like superfamily | Homologous Superfamily | |
IPR002197 | DNA binding HTH domain, Fis-type | Domain | |
IPR001789 | Signal transduction response regulator, receiver domain | Domain | |
IPR002078 | RNA polymerase sigma factor 54 interaction domain | Domain | |
IPR025662 | Sigma-54 interaction domain, ATP-binding site 1 | Binding Site | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR025943 | Sigma-54 interaction domain, ATP-binding site 2 | Binding Site | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |