Data From External Resources Integrated Into RCSB PDB

Alphafold Computed Structure Models by AlphaFold2
AlphaFold DB Computed Structure Models by AlphaFold2
ATC Anatomical Therapeutic Chemical (ATC) Classification System from World Health Organization
Binding MOAD Binding affinities
BindingDB Binding affinities
BMRB BMRB-to-PDB mappings
CATH Protein structure classification- Class, Architecture, Topology/fold, and Homologous superfamily
CCDC The Cambridge Crystallographic Data Centre
ChEBI Chemical entities of biological interest
ChEMBL Manually curated database of bioactive molecules with drug-like properties
DrugBank Drug and drug target data
ECOD Evolutionary Classification of Protein Domains
EMDB 3DEM density maps and associated metadata
ExplorEnz IUBMB Enzyme nomenclature and classification
ExplorEnz Enzyme database
Gencode Gene structure data
Gene Ontology Gene structure data
Genotype-Tissue Expression - GTEx (NIH Common Fund Data Resource) Tissue-specific gene expression data
GlyCosmos A web portal aiming to integrate the glycosciences with the life sciences about genes, proteins, lipids, pathways and diseases.
GlyGen A data integration and dissemination resource for carbohydrate and glycoconjugate related data which provides computational and informatics resources and tools for glycosciences research.
GlyTouCan An international glycan structure repository with unique accession code for each unique glycan.
Human Gene Nomenclature Committee Human gene name nomenclature and genomic information
IMGT The international ImMunoGeneTics information system
Immune Epitope Database Antibody and T cell epitopes
International Mouse Phenotyping Consortium - IMPC (NIH Common Fund Data Resource) Mouse gene phenotype data
InterPro Classification of protein families
InterPro Classification of protein families
MemProtMD Annotation of transmembrane protein structures
ModelArchive Computed Structure Models (e.g., by RoseTTAFold)
ModelArchive Computed Structure Models (e.g. by RoseTTAFold)
mpstruc Classification of transmembrane protein structures
NCBI Gene Gene info, reference sequences, et al.
NCBI Taxonomy Organism Classification
NDB Experimentally-determined nucleic acids and complex assemblies
OPM Classification of transmembrane protein structures and membrane segments
PDBbind-CN Binding affinities
PDBflex Protein structure flexibility
PDBTM Annotation of transmembrane protein structures and membrane segments
Pharos - Illuminating the Druggable Genome (NIH Common Fund Data Resource) Drug targets and diseases
ProteinDiffraction.org Diffraction images
PubChem Chemical information
PubMed Citation information
PubMedCentral Open access literature
RECOORD NMR structure ensembles
RESID Protein modifications
SAbDab The Structural Antibody Database
SBGrid Structural Biology Data Grid / diffraction images
SCOP Structural Classification of Proteins
SCOPe Structural Classification of Proteins — extended
SIFTS Structure Integration with Function, Taxonomy and Sequence
Thera-SAbDab Therapeutic Structural Antibody Database
Thera-SAbDab Therapeutic Structural Antibody Database
UniProt Protein sequences and annotations


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Last updated: 9/27/2022