1S9C

Crystal structure analysis of the 2-enoyl-CoA hydratase 2 domain of human peroxisomal multifunctional enzyme type 2


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1s9ca1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd1s9cf1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id1s9ci1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd1s9cj1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld1s9cl1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1s9cb1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd1s9cc1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd1s9cd1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed1s9ce1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd1s9cg1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd1s9ch1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd1s9ck1 Alpha and beta proteins (a+b) Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase MaoC-like 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8091656 3000149 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8091656 3000149 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8091656 3000149 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8091656 3000149 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8091656 3000149 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8091656 3000149 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
GSCOP2 FamilyMaoC-like 8003949 4000361 SCOP2 (2022-06-29)
GSCOP2 FamilyMaoC-like 8003952 4000361 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8091656 3000149 SCOP2 (2022-06-29)
HSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8091656 3000149 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyThioesterase/thiol ester dehydrase-isomerase-like 8003950 3000149 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMaoC_dehydratase1s9cA3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
AMaoC_dehydrat_Ne1s9cA2 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
FMaoC_dehydratase1s9cF3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
FMaoC_dehydrat_Ne1s9cF4 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
IMaoC_dehydratase1s9cI3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
IMaoC_dehydrat_Ne1s9cI4 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
JMaoC_dehydratase1s9cJ4 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
JMaoC_dehydrat_Ne1s9cJ3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
LMaoC_dehydratase1s9cL4 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
LMaoC_dehydrat_Ne1s9cL3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
BMaoC_dehydratase1s9cB2 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
BMaoC_dehydrat_Ne1s9cB1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
CMaoC_dehydratase1s9cC2 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
CMaoC_dehydrat_Ne1s9cC3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
DMaoC_dehydratase1s9cD4 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
DMaoC_dehydrat_Ne1s9cD3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
EMaoC_dehydratase1s9cE1 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
EMaoC_dehydrat_Ne1s9cE2 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
GMaoC_dehydratase1s9cG3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
GMaoC_dehydrat_Ne1s9cG4 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
HMaoC_dehydratase1s9cH3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
HMaoC_dehydrat_Ne1s9cH4 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)
KMaoC_dehydratase1s9cK4 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydratasECOD (1.6)
KMaoC_dehydrat_Ne1s9cK3 A: a+b two layersX: Thioesterase/thiol ester dehydrase-isomerase-likeH: Thioesterase/thiol ester dehydrase-isomerase (From Topology)T: Thioesterase/thiol ester dehydrase-isomeraseF: MaoC_dehydrat_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
F3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
I3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
J3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
L3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
B3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
C3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
D3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
E3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
G3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
H3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)
K3.10.129.10 Alpha Beta Roll Thiol Ester Dehydrase Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF22622MFE-2 hydratase 2 N-terminal domain (MFE-2_hydrat-2_N)MFE-2 hydratase 2 N-terminal domainThis entry represents a domain found in N-terminal in MFE-2 hydratase 2 and related enzymes. This domain is housing the cavity for the aliphatic acyl part of the substrate molecule. The flexibility of region within this domain plays a role in substra ...This entry represents a domain found in N-terminal in MFE-2 hydratase 2 and related enzymes. This domain is housing the cavity for the aliphatic acyl part of the substrate molecule. The flexibility of region within this domain plays a role in substrate binding in mammalian hydratase 2 [2].
Domain
A, B, C, D, E
PF01575MaoC like domain (MaoC_dehydratas)MaoC like domainThe maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [1]. The MaoC protein is found to share similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal hydratase-dehydroge ...The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [1]. The MaoC protein is found to share similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal hydratase-dehydrogenase-epimerase, fatty acid synthase beta subunit. Several bacterial proteins that are composed solely of this domain have (R)-specific enoyl-CoA hydratase activity [2]. This domain is also present in the NodN nodulation protein N.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Peroxisomal multifunctional enzyme type 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR051687Peroxisomal Beta-Oxidation EnzymesFamily
A, B, C, D, E
IPR002347Short-chain dehydrogenase/reductase SDRFamily
A, B, C, D, E
IPR020904Short-chain dehydrogenase/reductase, conserved siteConserved Site
A, B, C, D, E
IPR036527SCP2 sterol-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR003033SCP2 sterol-binding domainDomain
A, B, C, D, E
IPR029069HotDog domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR002539MaoC-like dehydratase domainDomain
A, B, C, D, E
IPR054357Peroxisomal multifunctional enzyme type 2-like, N-terminal domainDomain
A, B, C, D, E
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
enoyl-CoA hydratase  M-CSA #461

Mammalian peroxisomal multifunctional enzyme type 2 (MFE-2) is important in the beta-oxidation of very-long-chain and alpha-methyl-branched fatty acids as well as the synthesis of bile acids. It has three units: a dehydrogenase unit, an sterol carrier protein (SCP)-like unit and a central hydratase unit.

This entry represents the hydratase function, which reversibly catalyses the addition of water to the beta-carbon of trans-2-enoyl-CoAs with (R) specificity (the opposite to MFE-1).

Defined by 4 residues: ASP:A-193HIS:A-198ILE:A-213GLY:A-216
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Explore in 3DM-CSA Motif Definition
EC: 4.2.1 (PDB Primary Data)