1XMZ | pdb_00001xmz

Crystal structure of the dark state of kindling fluorescent protein kfp from anemonia sulcata

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth B]	d1xmzb1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	snake-locks sea anemone (Anemonia sulcata ) [TaxId: 6108 ],	SCOPe (2.08)
C [auth B]	d1xmzb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	snake-locks sea anemone (Anemonia sulcata ) [TaxId: 6108 ],	SCOPe (2.08)
A	d1xmza_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	snake-locks sea anemone (Anemonia sulcata ) [TaxId: 6108 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth B]	GFP	e1xmzB1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
A	GFP	e1xmzA1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth C], D	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C], D	GFP-like non-fluorescent chromoprotein FP595 chain 2	-	bioluminescence metabolic process cellular process	-
A, C [auth B]	GFP-like non-fluorescent chromoprotein FP595 chain 1	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR011584	Green fluorescent protein-related	Family
B [auth C], D	IPR009017	Green fluorescent protein	Homologous Superfamily
A, C [auth B]	IPR011584	Green fluorescent protein-related	Family
A, C [auth B]	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth C], D	CRK	Parent Component: MET, TYR, GLY RESID: AA0365 PSI-MOD : (E)-2,3-didehydrotyrosine MOD:00370
A, C [auth B]	NH2	RESID: AA0365 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 PSI-MOD : (E)-2,3-didehydrotyrosine MOD:00370 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.