2LW1 | pdb_00002lw1

The C-terminal domain of the Uup protein is a DNA-binding coiled coil motif

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Uup C-terminal domain-like	8045368	4004439	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Uup C-terminal domain-like	8090347	3002434	SCOP2 (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.287.380	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Valyl-tRNA synthetase, C-terminal domain	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16326	ABC transporter C-terminal domain (ABC_tran_CTD)	ABC transporter C-terminal domain	-	Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	ABC transporter ATP-binding protein uup	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	response to stimulus response to radiation response to abiotic stimulus cellular response to stimulus primary metabolic process DNA metabolic process DNA damage tolerance nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication cellular response to stress DNA damage response response to stress metabolic process response to stimulus response to radiation response to abiotic stimulus cellular response to stimulus primary metabolic process DNA metabolic process DNA damage tolerance nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR043686	ATP-binding protein Uup	Family
A	IPR017871	ABC transporter-like, conserved site	Conserved Site
A	IPR037118	Valyl-tRNA synthetase, tRNA-binding arm superfamily	Homologous Superfamily
A	IPR032781	ABC-transporter extension domain	Domain
A	IPR051309	ABC transporter ABCF subfamily ATPase	Family
A	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR032524	ABC transporter Uup, C-terminal	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.