2VBL | pdb_00002vbl

Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2vbla_	Alpha and beta proteins (a+b)	Homing endonuclease-like	Homing endonucleases	Group I mobile intron endonuclease	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)
B	d2vblb_	Alpha and beta proteins (a+b)	Homing endonuclease-like	Homing endonucleases	Group I mobile intron endonuclease	automated matches	(Chlamydomonas reinhardtii ) [TaxId: 3055 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Homing endonucleases	8032709	3000266	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Homing endonucleases	8032709	3000266	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	LAGLIDADG_1	e2vblA1	A: a+b two layers	X: Homing endonucleases-like	H: Homing endonucleases (From Topology)	T: Homing endonucleases	F: LAGLIDADG_1	ECOD (1.6)
B	LAGLIDADG_1	e2vblB1	A: a+b two layers	X: Homing endonucleases-like	H: Homing endonucleases (From Topology)	T: Homing endonucleases	F: LAGLIDADG_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	CATH (4.3.0)
B	3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00961	LAGLIDADG endonuclease (LAGLIDADG_1)	LAGLIDADG endonuclease		Domain
B	PF00961	LAGLIDADG endonuclease (LAGLIDADG_1)	LAGLIDADG endonuclease		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DNA ENDONUCLEASE I-CREI	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity cation binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding	nucleobase-containing compound metabolic process DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process intron homing	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
B	DNA ENDONUCLEASE I-CREI	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity cation binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding	nucleobase-containing compound metabolic process DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process intron homing	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
C	5'-D(DTDCDTDGDCDCDTDTDTDTDTDT DGPDAP)-3'	-	-	-
D [auth E]	5'-D(DTDTDADGDGDADTDCDCDTDTDC DAPDAP)-3'	-	-	-
E [auth S]	5'-D(DADADADADGDGDCDADGDAP)-3'	-	-	-
F [auth T]	5'-D(DADGDGDADTDCDCDTDADAP)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR004860	Homing endonuclease, LAGLIDADG domain	Domain
A	IPR027434	Homing endonuclease	Homologous Superfamily
B	IPR004860	Homing endonuclease, LAGLIDADG domain	Domain
B	IPR027434	Homing endonuclease	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.