2W2N | pdb_00002w2n

WT PCSK9-deltaC bound to EGF-A H306Y mutant of LDLR

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2w2na_	Alpha and beta proteins (a/b)	Subtilisin-like	Subtilisin-like	Subtilases	Proprotein convertase subtilisin/kexin type 9	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth E]	d2w2ne1	Small proteins	Knottins (small inhibitors, toxins, lectins)	EGF/Laminin	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth E]	d2w2ne2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Subtilisin-like	8069727	3000226	SCOP2B (2022-06-29)
B [auth E]	SCOP2B Superfamily	EGF/Laminin-like	8056609	3000412	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_S8	e2w2nA1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like (From Topology)	T: Subtilisin-like	F: Peptidase_S8	ECOD (1.6)
B [auth E]	FXa_inhibition	e2w2nE1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: FXa_inhibition	ECOD (1.6)
C [auth P]	Inhibitor_I9	e2w2nP1	A: a+b two layers	X: Alpha-beta plaits	H: Protease propeptides/inhibitors (From Topology)	T: Protease propeptides/inhibitors	F: Inhibitor_I9	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
B [auth E]	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)
C [auth P]	3.30.70.80	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Peptidase S8 propeptide/proteinase inhibitor I9	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth P]	PF05922	Peptidase inhibitor I9 (Inhibitor_I9)	Peptidase inhibitor I9	This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of ...	This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase [1], but have also been shown to act as 'temporary inhibitors' [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9	monoatomic cation transmembrane transporter activity channel regulator activity monoatomic ion channel activity sodium channel activity molecular function inhibitor activity passive transmembrane transporter activity transporter inhibitor activity inorganic molecular entity transmembrane transporter activity molecular function regulator activity inorganic cation transmembrane transporter activity sodium channel regulator activity transporter activity channel inhibitor activity ion channel regulator activity monoatomic cation transmembrane transporter activity channel regulator activity monoatomic ion channel activity sodium channel activity molecular function inhibitor activity passive transmembrane transporter activity transporter inhibitor activity inorganic molecular entity transmembrane transporter activity molecular function regulator activity inorganic cation transmembrane transporter activity sodium channel regulator activity transporter activity channel inhibitor activity ion channel regulator activity ion channel inhibitor activity sodium ion transmembrane transporter activity monoatomic cation channel activity sodium channel inhibitor activity channel activity monoatomic ion transmembrane transporter activity transporter regulator activity metal ion transmembrane transporter activity transmembrane transporter activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity lipoprotein particle binding protein-containing complex binding protein binding binding protein-lipid complex binding very-low-density lipoprotein particle binding apolipoprotein binding signaling receptor binding apolipoprotein receptor binding RNA binding nucleic acid binding low-density lipoprotein particle binding molecular transducer activity signaling receptor activity signaling receptor inhibitor activity signaling receptor regulator activity low-density lipoprotein particle receptor binding lipoprotein particle receptor binding very-low-density lipoprotein particle receptor binding	primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process apoptotic process cell death primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process apoptotic process cell death programmed cell death regulation of biological process neuron apoptotic process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of neuron apoptotic process positive regulation of cellular process regulation of neuron apoptotic process negative regulation of receptor binding regulation of protein binding regulation of molecular function regulation of receptor binding negative regulation of protein binding regulation of binding negative regulation of binding negative regulation of molecular function negative regulation of low-density lipoprotein particle receptor binding regulation of localization import into cell regulation of cellular component organization receptor internalization transport negative regulation of biological process negative regulation of transport negative regulation of endocytosis regulation of receptor internalization vesicle-mediated transport cellular component organization localization negative regulation of cellular process cellular component organization or biogenesis regulation of endocytosis negative regulation of cellular component organization regulation of transport negative regulation of receptor-mediated endocytosis regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport establishment of localization endocytosis receptor-mediated endocytosis negative regulation of receptor internalization receptor catabolic process catabolic process positive regulation of protein metabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process receptor metabolic process positive regulation of macromolecule metabolic process regulation of low-density lipoprotein particle receptor catabolic process positive regulation of receptor catabolic process regulation of protein metabolic process low-density lipoprotein particle receptor catabolic process protein catabolic process regulation of macromolecule metabolic process regulation of catabolic process positive regulation of low-density lipoprotein particle receptor catabolic process positive regulation of protein catabolic process positive regulation of catabolic process low-density lipoprotein receptor particle metabolic process regulation of receptor catabolic process regulation of metabolic process regulation of protein catabolic process cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus cellular response to stress response to stress response to starvation cellular response to starvation multicellular organismal process regulation of plasma lipoprotein particle levels regulation of low-density lipoprotein particle clearance negative regulation of low-density lipoprotein particle clearance plasma lipoprotein particle clearance negative regulation of lipoprotein particle clearance regulation of lipoprotein particle clearance regulation of multicellular organismal process low-density lipoprotein particle clearance negative regulation of multicellular organismal process negative regulation of low-density lipoprotein receptor activity negative regulation of ion transmembrane transporter activity monoatomic ion transmembrane transport negative regulation of monoatomic ion transport regulation of transmembrane transporter activity sodium ion transmembrane transport regulation of monoatomic ion transmembrane transport regulation of sodium ion transport negative regulation of sodium ion transmembrane transporter activity regulation of sodium ion transmembrane transport metal ion transport negative regulation of transmembrane transport regulation of transporter activity monoatomic cation transmembrane transport regulation of sodium ion transmembrane transporter activity negative regulation of monoatomic ion transmembrane transport monoatomic ion transport negative regulation of cation transmembrane transport regulation of metal ion transport monoatomic cation transport regulation of monoatomic ion transmembrane transporter activity regulation of monoatomic ion transport negative regulation of transporter activity negative regulation of sodium ion transmembrane transport inorganic ion transmembrane transport inorganic cation transmembrane transport transmembrane transport regulation of transmembrane transport regulation of monoatomic cation transmembrane transport negative regulation of sodium ion transport sodium ion transport regulation of signaling signaling regulation of signaling receptor activity regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication signal transduction negative regulation of sterol transport regulation of receptor-mediated endocytosis involved in cholesterol transport negative regulation of lipid localization regulation of intracellular cholesterol transport establishment of localization in cell sterol transport negative regulation of intracellular lipid transport regulation of intracellular transport regulation of sterol transport intracellular lipid transport intracellular transport lipid transport negative regulation of intracellular sterol transport cholesterol transport cellular localization regulation of intracellular sterol transport negative regulation of intracellular cholesterol transport intracellular cholesterol transport regulation of lipid transport organic hydroxy compound transport intracellular sterol transport negative regulation of receptor-mediated endocytosis involved in cholesterol transport receptor-mediated endocytosis involved in cholesterol transport regulation of cholesterol transport negative regulation of intracellular transport negative regulation of lipid transport regulation of intracellular lipid transport lipid localization negative regulation of cholesterol transport regulation of lipid localization regulation of cellular localization macromolecule localization developmental process multicellular organism development anatomical structure development animal organ development kidney development renal system development system development hepaticobiliary system development gland development liver development neurogenesis cellular developmental process cell differentiation nervous system development phospholipid metabolic process organophosphate metabolic process phosphate-containing compound metabolic process phosphorus metabolic process lipid metabolic process positive regulation of cellular component organization positive regulation of endocytosis positive regulation of receptor-mediated endocytosis positive regulation of receptor internalization positive regulation of transport sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis generation of neurons neuron differentiation secondary alcohol metabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process small molecule metabolic process vacuolar transport lysosomal transport lipoprotein metabolic process negative regulation of signaling regulation of receptor recycling negative regulation of receptor recycling negative regulation of metabolic process receptor recycling negative regulation of macromolecule metabolic process neutral lipid metabolic process triglyceride metabolic process glycerolipid metabolic process acylglycerol metabolic process cellular response to nitrogen compound response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical response to insulin cellular response to insulin stimulus cellular response to hormone stimulus	membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle COPII-coated ER to Golgi transport vesicle cellular anatomical structure cytoplasmic vesicle organelle coated vesicle cytoplasm vesicle PCSK9-AnxA2 complex protein-containing complex membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle COPII-coated ER to Golgi transport vesicle cellular anatomical structure cytoplasmic vesicle organelle coated vesicle cytoplasm vesicle PCSK9-AnxA2 complex protein-containing complex vacuolar membrane membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome Golgi apparatus endomembrane system membrane-enclosed lumen intracellular organelle lumen endoplasmic reticulum lumen organelle lumen endoplasmic reticulum perinuclear region of cytoplasm extracellular region extracellular space endosome membrane endolysosome membrane endolysosome vesicle membrane endosome cytoplasmic vesicle membrane cell surface cell periphery plasma membrane early endosome PCSK9-LDLR complex extrinsic component of plasma membrane extrinsic component of external side of plasma membrane extrinsic component of membrane external side of plasma membrane side of membrane late endosome
B [auth E]	LOW-DENSITY LIPOPROTEIN RECEPTOR	amide binding amyloid-beta binding binding peptide binding molecular adaptor activity identical protein binding protein binding virus receptor activity exogenous protein binding cation binding ion binding calcium ion binding metal ion binding small molecule binding amide binding amyloid-beta binding binding peptide binding molecular adaptor activity identical protein binding protein binding virus receptor activity exogenous protein binding cation binding ion binding calcium ion binding metal ion binding small molecule binding lipoprotein particle receptor activity cargo receptor activity very-low-density lipoprotein particle receptor activity enzyme binding protease binding clathrin heavy chain binding clathrin binding low-density lipoprotein particle receptor activity lipoprotein particle binding protein-containing complex binding protein-lipid complex binding low-density lipoprotein particle binding	multicellular organismal process catabolic process amyloid-beta metabolic process amyloid-beta clearance by cellular catabolic process metabolic process cellular process amide metabolic process amyloid-beta clearance regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation multicellular organismal process catabolic process amyloid-beta metabolic process amyloid-beta clearance by cellular catabolic process metabolic process cellular process amide metabolic process amyloid-beta clearance regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation positive regulation of biological process response to external stimulus regulation of inflammatory response positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stimulus regulation of response to stress response to stress positive regulation of defense response inflammatory response localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport regulation of biosynthetic process regulation of cellular process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process macromolecule localization phospholipid transport lipid localization lipid transport organophosphate ester transport cholesterol transport sterol transport organic hydroxy compound transport plasma lipoprotein particle clearance regulation of plasma lipoprotein particle levels developmental process blood vessel morphogenesis tube development artery development vasculature development circulatory system development multicellular organism development anatomical structure morphogenesis tube morphogenesis anatomical structure development artery morphogenesis blood vessel development system development regulation of cholesterol metabolic process sterol metabolic process steroid metabolic process regulation of steroid metabolic process regulation of lipid metabolic process cholesterol metabolic process alcohol metabolic process primary metabolic process regulation of primary metabolic process secondary alcohol metabolic process regulation of small molecule metabolic process small molecule metabolic process lipid metabolic process response to nutrient levels response to caloric restriction regulation of protein metabolic process negative regulation of metabolic process negative regulation of biological process negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of low-density lipoprotein particle clearance negative regulation of low-density lipoprotein particle clearance negative regulation of lipoprotein particle clearance regulation of lipoprotein particle clearance regulation of multicellular organismal process low-density lipoprotein particle clearance negative regulation of multicellular organismal process intestinal lipid absorption digestion system process intestinal absorption digestive system process intestinal cholesterol absorption lipid digestion cellular response to stimulus cellular response to low-density lipoprotein particle stimulus response to endogenous stimulus response to chemical response to lipoprotein particle response to nitrogen compound cellular response to lipoprotein particle stimulus cellular localization intracellular lipid transport intracellular cholesterol transport intracellular transport intracellular sterol transport establishment of localization in cell receptor-mediated endocytosis involved in cholesterol transport receptor-mediated endocytosis cholesterol import astrocyte differentiation negative regulation of astrocyte activation regulation of cell activation regulation of neurogenesis regulation of cell differentiation astrocyte activation glial cell development regulation of astrocyte differentiation regulation of cell development gliogenesis cell differentiation nervous system development negative regulation of gliogenesis negative regulation of glial cell differentiation central nervous system development negative regulation of response to external stimulus negative regulation of defense response glial cell activation neuroinflammatory response cellular developmental process regulation of developmental process negative regulation of inflammatory response cell development regulation of gliogenesis regulation of nervous system development neurogenesis negative regulation of neurogenesis astrocyte development regulation of neuroinflammatory response negative regulation of nervous system development negative regulation of cell differentiation regulation of multicellular organismal development negative regulation of response to stimulus negative regulation of developmental process cell activation regulation of glial cell differentiation negative regulation of astrocyte differentiation negative regulation of cell activation negative regulation of cell development glial cell differentiation regulation of astrocyte activation negative regulation of neuroinflammatory response regulation of macrophage activation regulation of leukocyte activation myeloid leukocyte activation leukocyte activation macrophage activation leukocyte activation involved in inflammatory response regulation of immune system process negative regulation of microglial cell activation negative regulation of immune system process immune system process microglial cell activation regulation of microglial cell activation negative regulation of leukocyte activation negative regulation of macrophage activation sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis neutral lipid metabolic process neutral lipid biosynthetic process regulation of triglyceride metabolic process positive regulation of triglyceride metabolic process lipid biosynthetic process acylglycerol biosynthetic process triglyceride metabolic process triglyceride biosynthetic process positive regulation of lipid metabolic process regulation of triglyceride biosynthetic process positive regulation of triglyceride biosynthetic process glycerolipid biosynthetic process positive regulation of lipid biosynthetic process glycerolipid metabolic process regulation of lipid biosynthetic process acylglycerol metabolic process behavior learning or memory long-term memory nervous system process cognition memory high-density lipoprotein particle clearance regulation of protein catabolic process in the vacuole positive regulation of protein metabolic process lysosomal protein catabolic process macromolecule catabolic process positive regulation of lysosomal protein catabolic process protein catabolic process in the vacuole protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of lysosomal protein catabolic process positive regulation of protein catabolic process in the vacuole regulation of protein catabolic process regulation of signaling negative regulation of signaling signaling regulation of receptor recycling negative regulation of receptor recycling receptor recycling receptor metabolic process response to lipid response to fatty acid response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus cellular response to lipid lipoprotein metabolic process lipoprotein catabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of cellular component organization negative regulation of amyloid fibril formation regulation of amyloid fibril formation amyloid fibril formation cellular component organization negative regulation of supramolecular fiber organization cellular component organization or biogenesis negative regulation of cellular component organization regulation of supramolecular fiber organization supramolecular fiber organization phospholipid catabolic process glycerophospholipid metabolic process glycerolipid catabolic process organophosphate catabolic process phospholipid metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process phosphatidylcholine metabolic process phosphorus metabolic process regulation of phospholipid catabolic process lipid catabolic process regulation of phosphatidylcholine metabolic process regulation of phospholipid metabolic process regulation of lipid catabolic process phosphatidylcholine catabolic process organophosphate metabolic process regulation of phosphatidylcholine catabolic process regulation of phosphorus metabolic process glycerophospholipid catabolic process	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane clathrin-coated pit endomembrane system apical part of cell membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane clathrin-coated pit endomembrane system apical part of cell membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane intracellular membrane-bounded organelle clathrin-coated endocytic vesicle cytoplasmic vesicle membrane coated vesicle membrane organelle cytoplasm organelle membrane basal part of cell basal plasma membrane plasma membrane region basolateral plasma membrane protein-containing complex receptor complex Golgi apparatus endosome membrane endosome sorting endosome somatodendritic compartment endolysosome membrane lytic vacuole endolysosome lysosome vacuolar membrane vacuole lytic vacuole membrane lysosomal membrane early endosome PCSK9-LDLR complex low-density lipoprotein particle extracellular region plasma lipoprotein particle extracellular space lipoprotein particle protein-lipid complex late endosome
C [auth P]	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9	monoatomic cation transmembrane transporter activity channel regulator activity monoatomic ion channel activity sodium channel activity molecular function inhibitor activity passive transmembrane transporter activity transporter inhibitor activity inorganic molecular entity transmembrane transporter activity molecular function regulator activity inorganic cation transmembrane transporter activity sodium channel regulator activity transporter activity channel inhibitor activity ion channel regulator activity monoatomic cation transmembrane transporter activity channel regulator activity monoatomic ion channel activity sodium channel activity molecular function inhibitor activity passive transmembrane transporter activity transporter inhibitor activity inorganic molecular entity transmembrane transporter activity molecular function regulator activity inorganic cation transmembrane transporter activity sodium channel regulator activity transporter activity channel inhibitor activity ion channel regulator activity ion channel inhibitor activity sodium ion transmembrane transporter activity monoatomic cation channel activity sodium channel inhibitor activity channel activity monoatomic ion transmembrane transporter activity transporter regulator activity metal ion transmembrane transporter activity transmembrane transporter activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity lipoprotein particle binding protein-containing complex binding protein binding binding protein-lipid complex binding very-low-density lipoprotein particle binding apolipoprotein binding signaling receptor binding apolipoprotein receptor binding RNA binding nucleic acid binding low-density lipoprotein particle binding molecular transducer activity signaling receptor activity signaling receptor inhibitor activity signaling receptor regulator activity low-density lipoprotein particle receptor binding lipoprotein particle receptor binding very-low-density lipoprotein particle receptor binding	primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process apoptotic process cell death primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process apoptotic process cell death programmed cell death regulation of biological process neuron apoptotic process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of neuron apoptotic process positive regulation of cellular process regulation of neuron apoptotic process negative regulation of receptor binding regulation of protein binding regulation of molecular function regulation of receptor binding negative regulation of protein binding regulation of binding negative regulation of binding negative regulation of molecular function negative regulation of low-density lipoprotein particle receptor binding regulation of localization import into cell regulation of cellular component organization receptor internalization transport negative regulation of biological process negative regulation of transport negative regulation of endocytosis regulation of receptor internalization vesicle-mediated transport cellular component organization localization negative regulation of cellular process cellular component organization or biogenesis regulation of endocytosis negative regulation of cellular component organization regulation of transport negative regulation of receptor-mediated endocytosis regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport establishment of localization endocytosis receptor-mediated endocytosis negative regulation of receptor internalization receptor catabolic process catabolic process positive regulation of protein metabolic process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process receptor metabolic process positive regulation of macromolecule metabolic process regulation of low-density lipoprotein particle receptor catabolic process positive regulation of receptor catabolic process regulation of protein metabolic process low-density lipoprotein particle receptor catabolic process protein catabolic process regulation of macromolecule metabolic process regulation of catabolic process positive regulation of low-density lipoprotein particle receptor catabolic process positive regulation of protein catabolic process positive regulation of catabolic process low-density lipoprotein receptor particle metabolic process regulation of receptor catabolic process regulation of metabolic process regulation of protein catabolic process cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus cellular response to stress response to stress response to starvation cellular response to starvation multicellular organismal process regulation of plasma lipoprotein particle levels regulation of low-density lipoprotein particle clearance negative regulation of low-density lipoprotein particle clearance plasma lipoprotein particle clearance negative regulation of lipoprotein particle clearance regulation of lipoprotein particle clearance regulation of multicellular organismal process low-density lipoprotein particle clearance negative regulation of multicellular organismal process negative regulation of low-density lipoprotein receptor activity negative regulation of ion transmembrane transporter activity monoatomic ion transmembrane transport negative regulation of monoatomic ion transport regulation of transmembrane transporter activity sodium ion transmembrane transport regulation of monoatomic ion transmembrane transport regulation of sodium ion transport negative regulation of sodium ion transmembrane transporter activity regulation of sodium ion transmembrane transport metal ion transport negative regulation of transmembrane transport regulation of transporter activity monoatomic cation transmembrane transport regulation of sodium ion transmembrane transporter activity negative regulation of monoatomic ion transmembrane transport monoatomic ion transport negative regulation of cation transmembrane transport regulation of metal ion transport monoatomic cation transport regulation of monoatomic ion transmembrane transporter activity regulation of monoatomic ion transport negative regulation of transporter activity negative regulation of sodium ion transmembrane transport inorganic ion transmembrane transport inorganic cation transmembrane transport transmembrane transport regulation of transmembrane transport regulation of monoatomic cation transmembrane transport negative regulation of sodium ion transport sodium ion transport regulation of signaling signaling regulation of signaling receptor activity regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication signal transduction negative regulation of sterol transport regulation of receptor-mediated endocytosis involved in cholesterol transport negative regulation of lipid localization regulation of intracellular cholesterol transport establishment of localization in cell sterol transport negative regulation of intracellular lipid transport regulation of intracellular transport regulation of sterol transport intracellular lipid transport intracellular transport lipid transport negative regulation of intracellular sterol transport cholesterol transport cellular localization regulation of intracellular sterol transport negative regulation of intracellular cholesterol transport intracellular cholesterol transport regulation of lipid transport organic hydroxy compound transport intracellular sterol transport negative regulation of receptor-mediated endocytosis involved in cholesterol transport receptor-mediated endocytosis involved in cholesterol transport regulation of cholesterol transport negative regulation of intracellular transport negative regulation of lipid transport regulation of intracellular lipid transport lipid localization negative regulation of cholesterol transport regulation of lipid localization regulation of cellular localization macromolecule localization developmental process multicellular organism development anatomical structure development animal organ development kidney development renal system development system development hepaticobiliary system development gland development liver development neurogenesis cellular developmental process cell differentiation nervous system development phospholipid metabolic process organophosphate metabolic process phosphate-containing compound metabolic process phosphorus metabolic process lipid metabolic process positive regulation of cellular component organization positive regulation of endocytosis positive regulation of receptor-mediated endocytosis positive regulation of receptor internalization positive regulation of transport sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis generation of neurons neuron differentiation secondary alcohol metabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process small molecule metabolic process vacuolar transport lysosomal transport lipoprotein metabolic process negative regulation of signaling regulation of receptor recycling negative regulation of receptor recycling negative regulation of metabolic process receptor recycling negative regulation of macromolecule metabolic process neutral lipid metabolic process triglyceride metabolic process glycerolipid metabolic process acylglycerol metabolic process cellular response to nitrogen compound response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical response to insulin cellular response to insulin stimulus cellular response to hormone stimulus	membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle COPII-coated ER to Golgi transport vesicle cellular anatomical structure cytoplasmic vesicle organelle coated vesicle cytoplasm vesicle PCSK9-AnxA2 complex protein-containing complex membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle COPII-coated ER to Golgi transport vesicle cellular anatomical structure cytoplasmic vesicle organelle coated vesicle cytoplasm vesicle PCSK9-AnxA2 complex protein-containing complex vacuolar membrane membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome Golgi apparatus endomembrane system membrane-enclosed lumen intracellular organelle lumen endoplasmic reticulum lumen organelle lumen endoplasmic reticulum perinuclear region of cytoplasm extracellular region extracellular space endosome membrane endolysosome membrane endolysosome vesicle membrane endosome cytoplasmic vesicle membrane cell surface cell periphery plasma membrane early endosome PCSK9-LDLR complex extrinsic component of plasma membrane extrinsic component of external side of plasma membrane extrinsic component of membrane external side of plasma membrane side of membrane late endosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR041052	Proprotein convertase subtilisin/kexin type 9, C-terminal domain 2	Domain
A	IPR037045	Peptidase S8 propeptide/proteinase inhibitor I9 superfamily	Homologous Superfamily
A	IPR010259	Peptidase S8 propeptide/proteinase inhibitor I9	Domain
A	IPR000209	Peptidase S8/S53 domain	Domain
A	IPR015500	Peptidase S8, subtilisin-related	Family
A	IPR041051	Proprotein convertase subtilisin/kexin type 9, C-terminal domain 3	Domain
A	IPR050131	Subtilisin-like serine protease	Family
A	IPR034193	Proteinase K-like catalytic domain	Domain
A	IPR041254	Proprotein convertase subtilisin/kexin type 9, C-terminal domain 1	Domain
A	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
B [auth E]	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
B [auth E]	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
B [auth E]	IPR049883	NOTCH1 EGF-like calcium-binding domain	Domain
B [auth E]	IPR000033	LDLR class B repeat	Repeat
B [auth E]	IPR001881	EGF-like calcium-binding domain	Domain
B [auth E]	IPR023415	Low-density lipoprotein (LDL) receptor class A, conserved site	Conserved Site
B [auth E]	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
B [auth E]	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat	Repeat
B [auth E]	IPR000742	EGF-like domain	Domain
B [auth E]	IPR051221	Low-density lipoprotein receptor-related	Family
B [auth E]	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
B [auth E]	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
C [auth P]	IPR041052	Proprotein convertase subtilisin/kexin type 9, C-terminal domain 2	Domain
C [auth P]	IPR037045	Peptidase S8 propeptide/proteinase inhibitor I9 superfamily	Homologous Superfamily
C [auth P]	IPR010259	Peptidase S8 propeptide/proteinase inhibitor I9	Domain
C [auth P]	IPR000209	Peptidase S8/S53 domain	Domain
C [auth P]	IPR015500	Peptidase S8, subtilisin-related	Family
C [auth P]	IPR041051	Proprotein convertase subtilisin/kexin type 9, C-terminal domain 3	Domain
C [auth P]	IPR050131	Subtilisin-like serine protease	Family
C [auth P]	IPR034193	Proteinase K-like catalytic domain	Domain
C [auth P]	IPR041254	Proprotein convertase subtilisin/kexin type 9, C-terminal domain 1	Domain
C [auth P]	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8NBP7	Hypercholesterolemia coronary artery disease hypercholesterolemia, autosomal dominant, 3 atherosclerosis abetalipoproteinemia familial hypercholesterolemia kidney Wilms tumor inborn errors of metabolism large cell medulloblastoma myocardial infarction pancreatic intraductal papillary-mucinous neoplasm abdominal aortic aneurysm ulcerative colitis hypolipoproteinemia inherited lipid metabolism disorder Hypercholesterolemia coronary artery disease hypercholesterolemia, autosomal dominant, 3 atherosclerosis abetalipoproteinemia familial hypercholesterolemia kidney Wilms tumor inborn errors of metabolism large cell medulloblastoma myocardial infarction pancreatic intraductal papillary-mucinous neoplasm abdominal aortic aneurysm ulcerative colitis hypolipoproteinemia inherited lipid metabolism disorder non-small cell lung carcinoma Perlman syndrome cardiovascular disease heart disease inborn carbohydrate metabolic disorder lung adenocarcinoma pancreatic ductal adenocarcinoma psoriasis arteriosclerosis disorder Crohn disease hereditary Wilms tumor hypercholesterolemia, familial, 1
B [auth E]	Pharos: P01130	familial hypercholesterolemia Dyslipidemias abdominal aortic aneurysm coronary artery disease non-alcoholic fatty liver disease obesity disorder Q fever amyotrophic lateral sclerosis type 1 hyperplasia atherosclerosis ovarian cancer psoriasis sinusitis glioblastoma arteriosclerosis disorder familial hypercholesterolemia Dyslipidemias abdominal aortic aneurysm coronary artery disease non-alcoholic fatty liver disease obesity disorder Q fever amyotrophic lateral sclerosis type 1 hyperplasia atherosclerosis ovarian cancer psoriasis sinusitis glioblastoma arteriosclerosis disorder invasive ductal breast carcinoma atypical teratoid rhabdoid tumor lung adenocarcinoma malignant pancreatic neoplasm cystic fibrosis pancreatic ductal adenocarcinoma fatty liver disease Sjogren syndrome heart disease type 2 diabetes mellitus breast cancer lung cancer congestive heart failure medulloblastoma non-small cell lung carcinoma ductal breast carcinoma in situ osteosarcoma exocrine pancreatic carcinoma peripheral arterial disease familial hyperlipidemia sarcoidosis Gaucher disease spina bifida hydrolethalus syndrome ulcerative colitis alcohol abuse hyperlipidemia carotid artery disease lung carcinoma myocardial infarction
C [auth P]	Pharos: Q8NBP7	Hypercholesterolemia coronary artery disease hypercholesterolemia, autosomal dominant, 3 atherosclerosis abetalipoproteinemia familial hypercholesterolemia kidney Wilms tumor inborn errors of metabolism large cell medulloblastoma myocardial infarction pancreatic intraductal papillary-mucinous neoplasm abdominal aortic aneurysm ulcerative colitis hypolipoproteinemia inherited lipid metabolism disorder Hypercholesterolemia coronary artery disease hypercholesterolemia, autosomal dominant, 3 atherosclerosis abetalipoproteinemia familial hypercholesterolemia kidney Wilms tumor inborn errors of metabolism large cell medulloblastoma myocardial infarction pancreatic intraductal papillary-mucinous neoplasm abdominal aortic aneurysm ulcerative colitis hypolipoproteinemia inherited lipid metabolism disorder non-small cell lung carcinoma Perlman syndrome cardiovascular disease heart disease inborn carbohydrate metabolic disorder lung adenocarcinoma pancreatic ductal adenocarcinoma psoriasis arteriosclerosis disorder Crohn disease hereditary Wilms tumor hypercholesterolemia, familial, 1