3ASW | pdb_00003asw

Structural and biochemical characterization of ClfB:ligand interactions

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SdrG_C_C	e3aswA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: SdrG_C_C	ECOD (1.6)
A	Candida_ALS_N_like	e3aswA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Candida_ALS_N_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF17961	Bacterial Ig domain (Big_8)	Bacterial Ig domain	This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins.	Domain
A	PF10425	C-terminus of bacterial fibrinogen-binding adhesin (SdrG_C_C)	C-terminus of bacterial fibrinogen-binding adhesin	This is the C-terminal half of a bacterial fibrinogen-binding adhesin SdrG. SdrG is a Gram-positive cell-wall-anchored adhesin that allows attachment of the bacterium to host tissues via specific binding to the beta-chain of human fibrinogen (Fg). Sd ...	This is the C-terminal half of a bacterial fibrinogen-binding adhesin SdrG. SdrG is a Gram-positive cell-wall-anchored adhesin that allows attachment of the bacterium to host tissues via specific binding to the beta-chain of human fibrinogen (Fg). SdrG binds to its ligand with a dynamic "dock, lock, and latch" mechanism which represents a general mode of ligand-binding for structurally related cell wall-anchored proteins in most Gram-positive bacteria. The C-terminal part of SdrG(276-596) is integral to the folding of the immunoglobulin-like whole to create the docking grooves necessary for Fg binding. The domain is associated with families of Cna_B, Pfam:PF05738 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Clumping factor B	-	cell adhesion cellular process	cellular anatomical structure extracellular region
B	Tail region derived peptide	structural constituent of skin epidermis structural molecule activity protein heterodimerization activity protein binding binding protein dimerization activity	protein-containing complex organization protein heterotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis protein heterooligomerization developmental process epithelium development epidermal cell differentiation protein-containing complex organization protein heterotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis protein heterooligomerization developmental process epithelium development epidermal cell differentiation cellular developmental process epidermis development animal organ development tissue development epithelial cell differentiation skin development cell differentiation keratinocyte differentiation anatomical structure development intermediate filament organization intermediate filament-based process organelle organization supramolecular fiber organization cytoskeleton organization intermediate filament cytoskeleton organization regulation of biological process regulation of developmental process biological regulation positive regulation of biological process positive regulation of epidermis development positive regulation of developmental process regulation of epidermis development peptide cross-linking macromolecule modification metabolic process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process	cell periphery cellular anatomical structure plasma membrane membrane cornified envelope intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle cell periphery cellular anatomical structure plasma membrane membrane cornified envelope intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle polymeric cytoskeletal fiber intermediate filament cytoskeleton intermediate filament supramolecular fiber supramolecular polymer supramolecular complex cell surface cytoplasm cytosol keratin filament nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050972	Serine-aspartate repeat-containing protein-like	Family
A	IPR005877	YSIRK Gram-positive signal peptide	Domain
A	IPR008966	Adhesion domain superfamily	Homologous Superfamily
A	IPR011252	Fibrogen-binding domain 1	Homologous Superfamily
A	IPR011266	Fibrinogen-binding domain 2	Domain
A	IPR019931	LPXTG cell wall anchor domain	Domain
A	IPR041171	SDR-like Ig domain	Domain
B	IPR039008	Intermediate filament, rod domain	Domain
B	IPR018039	Intermediate filament protein, conserved site	Conserved Site
B	IPR002957	Keratin, type I	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P13645	epidermolytic hyperkeratosis annular epidermolytic ichthyosis congenital reticular ichthyosiform erythroderma squamous cell carcinoma skin cancer Arsenic Poisoning skin neoplasm contact dermatitis palmoplantar keratosis congenital non-bullous ichthyosiform erythroderma glioblastoma osteosarcoma peeling skin syndrome skin disease cystic fibrosis epidermolytic hyperkeratosis annular epidermolytic ichthyosis congenital reticular ichthyosiform erythroderma squamous cell carcinoma skin cancer Arsenic Poisoning skin neoplasm contact dermatitis palmoplantar keratosis congenital non-bullous ichthyosiform erythroderma glioblastoma osteosarcoma peeling skin syndrome skin disease cystic fibrosis erythrokeratoderma ovarian cancer periodontitis breast cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.