3G1H

Crystal structure of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 5,6-dihydrouridine 5'-monophosphate


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd3g1hb_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Dd3g1hd_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Ed3g1he_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Fd3g1hf_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Hd3g1hh_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Id3g1hi_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Kd3g1hk_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Ld3g1hl_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Md3g1hm_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Ad3g1ha_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Cd3g1hc_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Gd3g1hg_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)
Jd3g1hj_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BOMPdecasee3g1hB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
DOMPdecasee3g1hD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
EOMPdecasee3g1hE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
FOMPdecasee3g1hF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
HOMPdecasee3g1hH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
IOMPdecasee3g1hI1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
KOMPdecasee3g1hK1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
LOMPdecasee3g1hL1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
MOMPdecasee3g1hM1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
AOMPdecasee3g1hA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
COMPdecasee3g1hC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
GOMPdecasee3g1hG1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
JOMPdecasee3g1hJ1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00215Orotidine 5'-phosphate decarboxylase / HUMPS family (OMPdecase)Orotidine 5'-phosphate decarboxylase / HUMPS familyThis family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly ...This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to Pfam:PF00834.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Orotidine 5'-phosphate decarboxylase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR047595Orotidine 5'-phosphate decarboxylase, archaealFamily
A, B, C, D, E
IPR018089Orotidine 5'-phosphate decarboxylase, active siteActive Site
A, B, C, D, E
IPR011060Ribulose-phosphate binding barrelHomologous Superfamily
A, B, C, D, E
IPR013785Aldolase-type TIM barrelHomologous Superfamily
A, B, C, D, E
IPR001754Orotidine 5'-phosphate decarboxylase domainDomain
A, B, C, D, E
IPR014732Orotidine 5'-phosphate decarboxylaseFamily