4CR3 | pdb_00004cr3

Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 1]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036787 3000131 SCOP2B (2022-06-29)
I [auth B]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064048 3000131 SCOP2B (2022-06-29)
M [auth F]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064066 3000131 SCOP2B (2022-06-29)
Y [auth R]SCOP2B SuperfamilyTPR-like 8057042 3001345 SCOP2B (2022-06-29)
Y [auth R]SCOP2B SuperfamilyWinged helix DNA-binding domain 8057044 3000034 SCOP2B (2022-06-29)
EA [auth X]SCOP2B SuperfamilyPH domain-like 8093403 3000134 SCOP2B (2022-06-29)
J [auth C]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064020 3000131 SCOP2B (2022-06-29)
K [auth D]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064012 3000131 SCOP2B (2022-06-29)
L [auth E]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064026 3000131 SCOP2B (2022-06-29)
N [auth G]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079169 3000131 SCOP2B (2022-06-29)
BA [auth U]SCOP2B SuperfamilyJAB1/MPN domain-like 8053272 3001105 SCOP2B (2022-06-29)
CA [auth V]SCOP2B SuperfamilyJAB1/MPN domain-like 8053248 3001105 SCOP2B (2022-06-29)
E [auth 5]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079504 3000131 SCOP2B (2022-06-29)
H [auth A]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036842 3000131 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]Proteasomee4cr311 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
B [auth 2]Proteasomee4cr321 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
F [auth 6]Proteasomee4cr361 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
I [auth B]Proteasomee4cr3B1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
M [auth F]Proteasomee4cr3F1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
Q [auth J]26Sp45e4cr3J3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
Q [auth J]KOG0652_2nde4cr3J2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: KOG0652_2ndECOD (1.6)
Q [auth J]Sigma54_activate4cr3J1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
R [auth K]26Sp45e4cr3K4 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
R [auth K]PRK03992e4cr3K3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
R [auth K]Sigma54_activate4cr3K2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
S [auth L]26Sp45e4cr3L3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
S [auth L]PRK03992e4cr3L2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
S [auth L]Sigma54_activate4cr3L1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
Y [auth R]PCI_2e4cr3R1 A: alpha arraysX: HTHH: HTHT: wingedF: PCI_2ECOD (1.6)
Y [auth R]RPN7e4cr3R2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RPN7ECOD (1.6)
Y [auth R]KOG0687e4cr3R3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG0687ECOD (1.6)
EA [auth X]Proteasom_Rpn13e4cr3X1 A: beta barrelsX: PH domain-likeH: PH domain-like (From Topology)T: PH domain-likeF: Proteasom_Rpn13ECOD (1.6)
GA [auth Z]KOG2005_1ste4cr3Z3 A: alpha superhelicesX: Repetitive alpha hairpinsH: 26S proteasome subunit Rpn2 N-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 N-terminal domainF: KOG2005_1stECOD (1.6)
GA [auth Z]KOG1858_2nde4cr3Z2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: KOG1858_2ndECOD (1.6)
J [auth C]Proteasomee4cr3C1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
K [auth D]Proteasomee4cr3D1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
L [auth E]Proteasomee4cr3E1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
N [auth G]Proteasomee4cr3G1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
O [auth H]PRK03992e4cr3H2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
O [auth H]Sigma54_activate4cr3H1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
P [auth I]26Sp45e4cr3I2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: 26Sp45ECOD (1.6)
P [auth I]PRK03992e4cr3I1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK03992ECOD (1.6)
P [auth I]Sigma54_activate4cr3I3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
T [auth M]KOG0652_1ste4cr3M3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: KOG0652_1stECOD (1.6)
T [auth M]KOG0652_2nde4cr3M2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: KOG0652_2ndECOD (1.6)
T [auth M]Sigma54_activate4cr3M1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
U [auth N]KOG2062_2nde4cr3N1 A: beta sandwichesX: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 C-terminal domainF: KOG2062_2ndECOD (1.6)
U [auth N]KOG2062_1ste4cr3N3 A: alpha superhelicesX: Repetitive alpha hairpinsH: 26S proteasome subunit Rpn2 N-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 N-terminal domainF: KOG2062_1stECOD (1.6)
U [auth N]HEAT_2_3e4cr3N2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: HEAT_2_3ECOD (1.6)
V [auth O]PCIe4cr3O2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
V [auth O]KOG2908_Ne4cr3O1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2908_NECOD (1.6)
V [auth O]KOG2908_likee4cr3O3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN9 C-terminal helixF: KOG2908_likeECOD (1.6)
W [auth P]PCIe4cr3P1 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
W [auth P]RPN7_1e4cr3P3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RPN7_1ECOD (1.6)
W [auth P]KOG1498e4cr3P2 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN5 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN5 C-terminal helixF: KOG1498ECOD (1.6)
X [auth Q]PCIe4cr3Q4 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
X [auth Q]KOG1463e4cr3Q1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG1463ECOD (1.6)
X [auth Q]RPN6_likee4cr3Q3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN6 C-termial helix (From Topology)T: 26S proteasome regulatory subunit RPN6 C-termial helixF: RPN6_likeECOD (1.6)
Z [auth S]PCIe4cr3S2 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
Z [auth S]KOG2581e4cr3S4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2581ECOD (1.6)
Z [auth S]Rpn3_Ce4cr3S3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN3 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN3 C-terminal helixF: Rpn3_CECOD (1.6)
AA [auth T]CSN8_PSD8_EIF3K_C_2e4cr3T1 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_C_2ECOD (1.6)
AA [auth T]SAC3_GANP_1ste4cr3T2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)
BA [auth U]JABe4cr3U1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JABECOD (1.6)
BA [auth U]MitMem_rege4cr3U2 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
CA [auth V]JABe4cr3V1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JABECOD (1.6)
CA [auth V]UNK_F_TYPEe4cr3V2 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: UNK_F_TYPEECOD (1.6)
C [auth 3]Proteasomee4cr331 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
DA [auth W]VWAe4cr3W1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: VWAECOD (1.6)
D [auth 4]Proteasomee4cr341 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
E [auth 5]Proteasomee4cr351 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
G [auth 7]Proteasomee4cr371 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)
H [auth A]Proteasomee4cr3A1 A: a+b four layersX: Ntn/PP2CH: NtnT: Proteasome subunitsF: ProteasomeECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
B [auth 2]PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
F [auth 6]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
I [auth B]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
I [auth B]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
M [auth F]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
M [auth F]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
Q [auth J]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
Q [auth J]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
Q [auth J]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
R [auth K]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
R [auth K]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
S [auth L]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
S [auth L]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
S [auth L]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
Y [auth R]PF2115426S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C)26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helixRPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix. Domain
Y [auth R]PF1060226S proteasome subunit RPN7 (RPN7)26S proteasome subunit RPN7- Repeat
Y [auth R]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
EA [auth X]PF04683Proteasome complex subunit Rpn13, Pru domain (Rpn13_ADRM1_Pru)Proteasome complex subunit Rpn13, Pru domainThis family was thought originally to be involved in cell-adhesion [1,2], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of ...Domain
GA [auth Z]PF17781RPN1 N-terminal domain (RPN1_RPN2_N)RPN1 N-terminal domain- Repeat
GA [auth Z]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
J [auth C]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
J [auth C]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
K [auth D]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
K [auth D]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
L [auth E]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
N [auth G]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
N [auth G]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
O [auth H]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
O [auth H]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
P [auth I]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
P [auth I]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
P [auth I]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
T [auth M]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
T [auth M]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
T [auth M]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
U [auth N]PF13646HEAT repeats (HEAT_2)HEAT repeats- Repeat
U [auth N]PF1800426S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C)26S proteasome regulatory subunit RPN2 C-terminal domainThis is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ...Domain
U [auth N]PF2150526S proteasome subunit RPN2, N-terminal domain (RPN2_N)26S proteasome subunit RPN2, N-terminal domain- Repeat
U [auth N]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
V [auth O]PF18261Rpn9 C-terminal helix (Rpn9_C)Rpn9 C-terminal helix- Family
V [auth O]PF22037PSD13 N-terminal repeats (PSD13_N)PSD13 N-terminal repeats- Repeat
V [auth O]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
W [auth P]PF1809826S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C)26S proteasome regulatory subunit RPN5 C-terminal domainThis is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ...Domain
W [auth P]PF22241PSMD12/CSN4, N-terminal (PSMD12-CSN4_N)PSMD12/CSN4, N-terminal- Repeat
W [auth P]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
X [auth Q]PF1805526S proteasome regulatory subunit RPN6 N-terminal domain (RPN6_N)26S proteasome regulatory subunit RPN6 N-terminal domain- Repeat
X [auth Q]PF1850326S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix)26S proteasome subunit RPN6 C-terminal helix domainThis is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2]. Domain
X [auth Q]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
Z [auth S]PF08375Proteasome regulatory subunit C-terminal (Rpn3_C)Proteasome regulatory subunit C-terminal- Family
Z [auth S]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
AA [auth T]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
BA [auth U]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
C [auth 3]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
DA [auth W]PF13519von Willebrand factor type A domain (VWA_2)von Willebrand factor type A domainDomain
D [auth 4]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
G [auth 7]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
H [auth A]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...Domain
H [auth A]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]PROTEASOME COMPONENT PRE3
B [auth 2]PROTEASOME COMPONENT PUP1
F [auth 6]PROTEASOME COMPONENT C5-
I [auth B]PROTEASOME COMPONENT Y7-
M [auth F]PROTEASOME COMPONENT PRE5-
Q [auth J]26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG
R [auth K]26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG
S [auth L]26S PROTEASE SUBUNIT RPT4
Y [auth R]26S PROTEASOME REGULATORY SUBUNIT RPN7
EA [auth X]26S PROTEASOME REGULATORY SUBUNIT RPN13
GA [auth Z]26S PROTEASOME REGULATORY SUBUNIT RPN1
J [auth C]PROTEASOME COMPONENT Y13-
K [auth D]PROTEASOME COMPONENT PRE6-
L [auth E]PROTEASOME COMPONENT PUP2-
N [auth G]PROTEASOME COMPONENT C1
O [auth H]26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG
P [auth I]26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG
T [auth M]26S PROTEASE REGULATORY SUBUNIT 6A
U [auth N]26S PROTEASOME REGULATORY SUBUNIT RPN2
V [auth O]26S PROTEASOME REGULATORY SUBUNIT RPN9
W [auth P]26S PROTEASOME REGULATORY SUBUNIT RPN5-
X [auth Q]26S PROTEASOME REGULATORY SUBUNIT RPN6
Z [auth S]26S PROTEASOME REGULATORY SUBUNIT RPN3
AA [auth T]26S PROTEASOME REGULATORY SUBUNIT RPN12-
BA [auth U]26S PROTEASOME REGULATORY SUBUNIT RPN8
CA [auth V]26S PROTEASOME REGULATORY SUBUNIT RPN11
C [auth 3]PROTEASOME COMPONENT PUP3
DA [auth W]26S PROTEASOME REGULATORY SUBUNIT RPN10
FA [auth Y]26S PROTEASOME COMPLEX SUBUNIT SEM1
D [auth 4]PROTEASOME COMPONENT C11
E [auth 5]PROTEASOME COMPONENT PRE2
G [auth 7]PROTEASOME COMPONENT PRE4-
H [auth A]PROTEASOME COMPONENT C7-ALPHA-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
A [auth 1]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
A [auth 1]IPR023333Proteasome B-type subunitFamily
A [auth 1]IPR001353Proteasome, subunit alpha/betaFamily
A [auth 1]IPR000243Peptidase T1A, proteasome beta-subunitFamily
B [auth 2]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
B [auth 2]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
B [auth 2]IPR024689Proteasome beta subunit, C-terminalDomain
B [auth 2]IPR023333Proteasome B-type subunitFamily
B [auth 2]IPR001353Proteasome, subunit alpha/betaFamily
B [auth 2]IPR000243Peptidase T1A, proteasome beta-subunitFamily
F [auth 6]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
F [auth 6]IPR023333Proteasome B-type subunitFamily
F [auth 6]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
F [auth 6]IPR001353Proteasome, subunit alpha/betaFamily
I [auth B]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
I [auth B]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
I [auth B]IPR050115Proteasome subunit alphaFamily
I [auth B]IPR023332Proteasome alpha-type subunitFamily
I [auth B]IPR001353Proteasome, subunit alpha/betaFamily
M [auth F]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
M [auth F]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
M [auth F]IPR050115Proteasome subunit alphaFamily
M [auth F]IPR023332Proteasome alpha-type subunitFamily
M [auth F]IPR001353Proteasome, subunit alpha/betaFamily
Q [auth J]IPR05022126S Proteasome Regulatory ATPaseFamily
Q [auth J]IPR041569AAA ATPase, AAA+ lid domainDomain
Q [auth J]IPR032501Proteasomal ATPase, second OB domainDomain
Q [auth J]IPR003960ATPase, AAA-type, conserved siteConserved Site
Q [auth J]IPR003593AAA+ ATPase domainDomain
Q [auth J]IPR003959ATPase, AAA-type, coreDomain
Q [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth J]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
R [auth K]IPR05022126S Proteasome Regulatory ATPaseFamily
R [auth K]IPR032501Proteasomal ATPase, second OB domainDomain
R [auth K]IPR003960ATPase, AAA-type, conserved siteConserved Site
R [auth K]IPR003593AAA+ ATPase domainDomain
R [auth K]IPR003959ATPase, AAA-type, coreDomain
R [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
R [auth K]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
S [auth L]IPR05022126S Proteasome Regulatory ATPaseFamily
S [auth L]IPR041569AAA ATPase, AAA+ lid domainDomain
S [auth L]IPR032501Proteasomal ATPase, second OB domainDomain
S [auth L]IPR003960ATPase, AAA-type, conserved siteConserved Site
S [auth L]IPR003593AAA+ ATPase domainDomain
S [auth L]IPR003959ATPase, AAA-type, coreDomain
S [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth L]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Y [auth R]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
Y [auth R]IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
Y [auth R]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
Y [auth R]IPR04954926S proteasome regulatory subunit RPN7/PSMD6, C-terminal helixDomain
Y [auth R]IPR000717Proteasome component (PCI) domainDomain
Y [auth R]IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain
Y [auth R]IPR019734Tetratricopeptide repeatRepeat
EA [auth X]IPR044868Rpn13/ADRM1, Pru domainDomain
EA [auth X]IPR006773Proteasomal ubiquitin receptor Rpn13/ADRM1Family
EA [auth X]IPR038633Proteasomal ubiquitin receptor Rpn13/ADRM1, Pru domain superfamilyHomologous Superfamily
GA [auth Z]IPR04143326S proteasome non-ATPase regulatory subunit RPN1, C-terminalDomain
GA [auth Z]IPR016024Armadillo-type foldHomologous Superfamily
GA [auth Z]IPR002015Proteasome/cyclosome repeatRepeat
GA [auth Z]IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitFamily
GA [auth Z]IPR011989Armadillo-like helicalHomologous Superfamily
GA [auth Z]IPR040892RPN1, N-terminalDomain
J [auth C]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
J [auth C]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
J [auth C]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
J [auth C]IPR050115Proteasome subunit alphaFamily
J [auth C]IPR023332Proteasome alpha-type subunitFamily
J [auth C]IPR001353Proteasome, subunit alpha/betaFamily
K [auth D]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
K [auth D]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
K [auth D]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
K [auth D]IPR050115Proteasome subunit alphaFamily
K [auth D]IPR023332Proteasome alpha-type subunitFamily
K [auth D]IPR001353Proteasome, subunit alpha/betaFamily
L [auth E]IPR033812Proteasome subunit alpha5Family
L [auth E]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
L [auth E]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
L [auth E]IPR050115Proteasome subunit alphaFamily
L [auth E]IPR023332Proteasome alpha-type subunitFamily
L [auth E]IPR001353Proteasome, subunit alpha/betaFamily
N [auth G]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
N [auth G]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
N [auth G]IPR050115Proteasome subunit alphaFamily
N [auth G]IPR023332Proteasome alpha-type subunitFamily
N [auth G]IPR001353Proteasome, subunit alpha/betaFamily
O [auth H]IPR04872326S proteasome regulatory subunit 7-like, OB domainDomain
O [auth H]IPR05022126S Proteasome Regulatory ATPaseFamily
O [auth H]IPR041569AAA ATPase, AAA+ lid domainDomain
O [auth H]IPR003960ATPase, AAA-type, conserved siteConserved Site
O [auth H]IPR003593AAA+ ATPase domainDomain
O [auth H]IPR003959ATPase, AAA-type, coreDomain
O [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth H]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth I]IPR05022126S Proteasome Regulatory ATPaseFamily
P [auth I]IPR041569AAA ATPase, AAA+ lid domainDomain
P [auth I]IPR032501Proteasomal ATPase, second OB domainDomain
P [auth I]IPR003960ATPase, AAA-type, conserved siteConserved Site
P [auth I]IPR003593AAA+ ATPase domainDomain
P [auth I]IPR003959ATPase, AAA-type, coreDomain
P [auth I]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth I]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
T [auth M]IPR05022126S Proteasome Regulatory ATPaseFamily
T [auth M]IPR041569AAA ATPase, AAA+ lid domainDomain
T [auth M]IPR032501Proteasomal ATPase, second OB domainDomain
T [auth M]IPR003960ATPase, AAA-type, conserved siteConserved Site
T [auth M]IPR003593AAA+ ATPase domainDomain
T [auth M]IPR003959ATPase, AAA-type, coreDomain
T [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth M]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
U [auth N]IPR04062326S proteasome regulatory subunit RPN2, C-terminalDomain
U [auth N]IPR016024Armadillo-type foldHomologous Superfamily
U [auth N]IPR002015Proteasome/cyclosome repeatRepeat
U [auth N]IPR011989Armadillo-like helicalHomologous Superfamily
U [auth N]IPR04857026S proteasome non-ATPase regulatory subunit 1/RPN2, N-terminal domainDomain
U [auth N]IPR01664226S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunitFamily
V [auth O]IPR054179PSD13, N-terminalDomain
V [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
V [auth O]IPR03529826S Proteasome non-ATPase regulatory subunit 13Family
V [auth O]IPR000717Proteasome component (PCI) domainDomain
V [auth O]IPR040798Rpn9, C-terminal helixDomain
W [auth P]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
W [auth P]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth P]IPR000717Proteasome component (PCI) domainDomain
W [auth P]IPR04089626S proteasome regulatory subunit RPN5, C-terminal domainDomain
W [auth P]IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
W [auth P]IPR054559PSMD12/CSN4-like, N-terminalDomain
X [auth Q]IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
X [auth Q]IPR0407806S proteasome subunit Rpn6, C-terminal helix domainDomain
X [auth Q]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
X [auth Q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
X [auth Q]IPR04077326S proteasome regulatory subunit Rpn6, N-terminalDomain
X [auth Q]IPR000717Proteasome component (PCI) domainDomain
Z [auth S]IPR000717Proteasome component (PCI) domainDomain
Z [auth S]IPR01358626S proteasome regulatory subunit, C-terminalDomain
Z [auth S]IPR050756COP9 signalosome complex subunit 3Family
Z [auth S]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
AA [auth T]IPR000717Proteasome component (PCI) domainDomain
AA [auth T]IPR00674626S proteasome non-ATPase regulatory subunit Rpn12Family
AA [auth T]IPR033464CSN8/PSMD8/EIF3KDomain
BA [auth U]IPR024969EIF3F/CSN6-like, C-terminalDomain
BA [auth U]IPR037518MPN domainDomain
BA [auth U]IPR03385826S Proteasome non-ATPase regulatory subunit 7/8Family
BA [auth U]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
CA [auth V]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
CA [auth V]IPR037518MPN domainDomain
CA [auth V]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
C [auth 3]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
C [auth 3]IPR023333Proteasome B-type subunitFamily
C [auth 3]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
C [auth 3]IPR001353Proteasome, subunit alpha/betaFamily
C [auth 3]IPR033811Proteasome beta 3 subunitFamily
DA [auth W]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
DA [auth W]IPR02704026S proteasome non-ATPase regulatory subunit 4Family
DA [auth W]IPR002035von Willebrand factor, type ADomain
DA [auth W]IPR003903Ubiquitin interacting motifConserved Site
FA [auth Y]IPR007834DSS1/SEM1Family
D [auth 4]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
D [auth 4]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
D [auth 4]IPR023333Proteasome B-type subunitFamily
D [auth 4]IPR001353Proteasome, subunit alpha/betaFamily
D [auth 4]IPR035206Proteasome subunit beta 2Family
E [auth 5]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
E [auth 5]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
E [auth 5]IPR023333Proteasome B-type subunitFamily
E [auth 5]IPR001353Proteasome, subunit alpha/betaFamily
E [auth 5]IPR000243Peptidase T1A, proteasome beta-subunitFamily
G [auth 7]IPR016050Proteasome beta-type subunit, conserved siteConserved Site
G [auth 7]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
G [auth 7]IPR023333Proteasome B-type subunitFamily
G [auth 7]IPR016295Proteasome subunit beta 4Family
G [auth 7]IPR001353Proteasome, subunit alpha/betaFamily
H [auth A]IPR000426Proteasome alpha-subunit, N-terminal domainDomain
H [auth A]IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
H [auth A]IPR050115Proteasome subunit alphaFamily
H [auth A]IPR023332Proteasome alpha-type subunitFamily
H [auth A]IPR001353Proteasome, subunit alpha/betaFamily
H [auth A]IPR034642Proteasome subunit alpha6Family