4E0U

Crystal structure of CdpNPT in complex with thiolodiphosphate and (S)-benzodiazependione

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Prenyltransferase-like	8053363	3001496	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prenyltransferase-like	8053363	3001496	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Trp_DMAT,RNAse_Pc_like	e4e0uA1	A: a+b duplicates or obligate multimers	X: Prenyltransferase-like (From Topology)	H: Prenyltransferase-like (From Topology)	T: Prenyltransferase-like	F: Trp_DMAT,RNAse_Pc_like	ECOD (1.6)
B	Trp_DMAT,RNAse_Pc_like	e4e0uB1	A: a+b duplicates or obligate multimers	X: Prenyltransferase-like (From Topology)	H: Prenyltransferase-like (From Topology)	T: Prenyltransferase-like	F: Trp_DMAT,RNAse_Pc_like	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF11991	Tryptophan dimethylallyltransferase (Trp_DMAT)	Tryptophan dimethylallyltransferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Cyclic dipeptide N-prenyltransferase	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity peptidase activity catalytic activity, acting on a protein aminopeptidase activity hydrolase activity exopeptidase activity	alkaloid metabolic process metabolic process proteolysis primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR017795	Aromatic prenyltransferase, DMATS-type	Family
A, B	IPR033964	Aromatic prenyltransferase	Family
A, B	IPR012148	Aromatic prenyltransferase DMATS-type, fungi	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.