5OO6

Complex of human nuclear cap-binding complex with ARS2 C-terminal peptide


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5oo6b_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD, aka RNA recognition motif (RRM) Canonical RBD automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth E]d5oo6e_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD, aka RNA recognition motif (RRM) Canonical RBD automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
F [auth H]d5oo6h_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD, aka RNA recognition motif (RRM) Canonical RBD automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth K]d5oo6k_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD, aka RNA recognition motif (RRM) Canonical RBD automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
J [auth N]d5oo6n_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD, aka RNA recognition motif (RRM) Canonical RBD automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
L [auth Q]d5oo6q_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD, aka RNA recognition motif (RRM) Canonical RBD automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
N [auth T]d5oo6t_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD, aka RNA recognition motif (RRM) Canonical RBD automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
P [auth W]d5oo6w_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD, aka RNA recognition motif (RRM) Canonical RBD automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyARM repeat-like 8042374 3000116 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyARM repeat-like 8042373 3000116 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyARM repeat-like 8042371 3000116 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyARM repeat-like 8042371 3000116 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyARM repeat-like 8042374 3000116 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyARM repeat-like 8042373 3000116 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyARM repeat-like 8042374 3000116 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyARM repeat-like 8042371 3000116 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyARM repeat-like 8042373 3000116 SCOP2B (2022-06-29)
G [auth J]SCOP2B SuperfamilyARM repeat-like 8042373 3000116 SCOP2B (2022-06-29)
G [auth J]SCOP2B SuperfamilyARM repeat-like 8042374 3000116 SCOP2B (2022-06-29)
G [auth J]SCOP2B SuperfamilyARM repeat-like 8042371 3000116 SCOP2B (2022-06-29)
I [auth M]SCOP2B SuperfamilyARM repeat-like 8042371 3000116 SCOP2B (2022-06-29)
I [auth M]SCOP2B SuperfamilyARM repeat-like 8042373 3000116 SCOP2B (2022-06-29)
I [auth M]SCOP2B SuperfamilyARM repeat-like 8042374 3000116 SCOP2B (2022-06-29)
K [auth P]SCOP2B SuperfamilyARM repeat-like 8042374 3000116 SCOP2B (2022-06-29)
K [auth P]SCOP2B SuperfamilyARM repeat-like 8042371 3000116 SCOP2B (2022-06-29)
K [auth P]SCOP2B SuperfamilyARM repeat-like 8042373 3000116 SCOP2B (2022-06-29)
M [auth S]SCOP2B SuperfamilyARM repeat-like 8042371 3000116 SCOP2B (2022-06-29)
M [auth S]SCOP2B SuperfamilyARM repeat-like 8042374 3000116 SCOP2B (2022-06-29)
M [auth S]SCOP2B SuperfamilyARM repeat-like 8042373 3000116 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyARM repeat-like 8042374 3000116 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyARM repeat-like 8042373 3000116 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyARM repeat-like 8042371 3000116 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRNA-binding domain, RBD 8042382 3000110 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRNA-binding domain, RBD 8042382 3000110 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyRNA-binding domain, RBD 8042382 3000110 SCOP2B (2022-06-29)
H [auth K]SCOP2B SuperfamilyRNA-binding domain, RBD 8042382 3000110 SCOP2B (2022-06-29)
J [auth N]SCOP2B SuperfamilyRNA-binding domain, RBD 8042382 3000110 SCOP2B (2022-06-29)
L [auth Q]SCOP2B SuperfamilyRNA-binding domain, RBD 8042382 3000110 SCOP2B (2022-06-29)
N [auth T]SCOP2B SuperfamilyRNA-binding domain, RBD 8042382 3000110 SCOP2B (2022-06-29)
P [auth W]SCOP2B SuperfamilyRNA-binding domain, RBD 8042382 3000110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMIF4Ge5oo6A2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
AMIF4G_likee5oo6A3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_likeECOD (1.6)
AMIF4G_like_2e5oo6A1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_like_2ECOD (1.6)
C [auth D]MIF4Ge5oo6D3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
C [auth D]MIF4G_likee5oo6D1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_likeECOD (1.6)
C [auth D]MIF4G_like_2e5oo6D2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_like_2ECOD (1.6)
E [auth G]MIF4Ge5oo6G2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
E [auth G]MIF4G_likee5oo6G3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_likeECOD (1.6)
E [auth G]MIF4G_like_2e5oo6G1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_like_2ECOD (1.6)
G [auth J]MIF4Ge5oo6J3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
G [auth J]MIF4G_likee5oo6J1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_likeECOD (1.6)
G [auth J]MIF4G_like_2e5oo6J2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_like_2ECOD (1.6)
I [auth M]MIF4Ge5oo6M3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
I [auth M]MIF4G_likee5oo6M2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_likeECOD (1.6)
I [auth M]MIF4G_like_2e5oo6M1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_like_2ECOD (1.6)
K [auth P]MIF4Ge5oo6P2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
K [auth P]MIF4G_likee5oo6P3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_likeECOD (1.6)
K [auth P]MIF4G_like_2e5oo6P1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_like_2ECOD (1.6)
M [auth S]MIF4Ge5oo6S3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
M [auth S]MIF4G_likee5oo6S2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_likeECOD (1.6)
M [auth S]MIF4G_like_2e5oo6S1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_like_2ECOD (1.6)
O [auth V]MIF4Ge5oo6V2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
O [auth V]MIF4G_likee5oo6V1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_likeECOD (1.6)
O [auth V]MIF4G_like_2e5oo6V3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4G_like_2ECOD (1.6)
BRRM_1_6e5oo6B1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
D [auth E]RRM_1_6e5oo6E1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
F [auth H]RRM_1_6e5oo6H1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
H [auth K]RRM_1_6e5oo6K1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
J [auth N]RRM_1_6e5oo6N1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
L [auth Q]RRM_1_6e5oo6Q1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
N [auth T]RRM_1_6e5oo6T1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
P [auth W]RRM_1_6e5oo6W1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.25.40.180 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat CATH (4.3.0)
C [auth D]1.25.40.180 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat CATH (4.3.0)
E [auth G]1.25.40.180 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat CATH (4.3.0)
G [auth J]1.25.40.180 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat CATH (4.3.0)
I [auth M]1.25.40.180 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat CATH (4.3.0)
K [auth P]1.25.40.180 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat CATH (4.3.0)
M [auth S]1.25.40.180 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat CATH (4.3.0)
O [auth V]1.25.40.180 Mainly Alpha Alpha Horseshoe Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat CATH (4.3.0)
B3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)
D [auth E]3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)
F [auth H]3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)
H [auth K]3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)
J [auth N]3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)
L [auth Q]3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)
N [auth T]3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)
P [auth W]3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09088MIF4G like (MIF4G_like)MIF4G like- Repeat
PF09090MIF4G like (MIF4G_like_2)MIF4G like- Repeat
PF02854MIF4G domain (MIF4G)MIF4G domain- Repeat
PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Nuclear cap-binding protein subunit 1
Nuclear cap-binding protein subunit 2
Serrate RNA effector molecule homolog

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016024Armadillo-type foldHomologous Superfamily
IPR015172MIF4G-like, type 1Domain
IPR027159Nuclear cap-binding protein subunit 1Family
IPR015174MIF4G-like, type 2Domain
IPR003890MIF4G-like, type 3Domain
IPR034148NCBP2, RNA recognition motifDomain
IPR000504RNA recognition motif domainDomain
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR035979RNA-binding domain superfamilyHomologous Superfamily
IPR027157Nuclear cap-binding protein subunit 2Family
IPR021933SERRATE/Ars2, N-terminalDomain
IPR039727SERRATE/Ars2Family
IPR007042SERRATE/Ars2 , C-terminalDomain
IPR035979RNA-binding domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation