5TIP
The Structure of the Major Capsid protein of PBCV-1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Major capsid protein vp54 | 8030894 | 4002513 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Major capsid protein vp54 | 8030895 | 4002513 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Group II dsDNA viruses VP | 8043273 | 3001214 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Group II dsDNA viruses VP | 8043274 | 3001214 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8043274 | 3001214 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8043273 | 3001214 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group II dsDNA viruses VP | 8043274 | 3001214 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group II dsDNA viruses VP | 8043273 | 3001214 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group II dsDNA viruses VP | 8043273 | 3001214 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group II dsDNA viruses VP | 8043274 | 3001214 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Capsid_NCLDV | e5tipA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Capsid_NCLDV | ECOD (1.6) |
A | Capsid_N | e5tipA2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Capsid_N | ECOD (1.6) |
B | Capsid_NCLDV | e5tipB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Capsid_NCLDV | ECOD (1.6) |
B | Capsid_N | e5tipB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Capsid_N | ECOD (1.6) |
C | Capsid_NCLDV | e5tipC2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Capsid_NCLDV | ECOD (1.6) |
C | Capsid_N | e5tipC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Capsid_N | ECOD (1.6) |
D | Capsid_NCLDV | e5tipD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Capsid_NCLDV | ECOD (1.6) |
D | Capsid_N | e5tipD2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Capsid_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.70.9.10 | Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon | domain 4 | CATH (4.3.0) |
A | 2.70.9.20 | Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon | domain 4 | CATH (4.3.0) |
B | 2.70.9.10 | Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon | domain 4 | CATH (4.3.0) |
B | 2.70.9.20 | Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon | domain 4 | CATH (4.3.0) |
C | 2.70.9.10 | Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon | domain 4 | CATH (4.3.0) |
C | 2.70.9.20 | Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon | domain 4 | CATH (4.3.0) |
D | 2.70.9.10 | Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon | domain 4 | CATH (4.3.0) |
D | 2.70.9.20 | Mainly Beta | Distorted Sandwich | Adenovirus Type 2 Hexon | domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16903 | Major capsid protein N-terminus (Capsid_N) | Major capsid protein N-terminus | This is the N-terminal domain of the major capsid protein in several dsDNA viruses [1]. | Domain | |
PF04451 | Large eukaryotic DNA virus major capsid protein (Capsid_NCLDV) | Large eukaryotic DNA virus major capsid protein | This family includes the major capsid protein of iridoviruses, chlorella virus and Spodoptera ascovirus, which are all dsDNA viruses with no RNA stage. This is the most abundant structural protein and can account for up to 45% of virion protein [1]. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Major capsid protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR031654 | Major capsid protein, N-terminal | Domain | |
IPR007542 | Major capsid protein, C-terminal | Domain | |
IPR038519 | Major capsid protein, C-terminal domain superfamily | Homologous Superfamily | |
IPR016112 | Group II dsDNA virus coat/capsid protein | Homologous Superfamily |