6EFI | pdb_00006efi

SK678 binding region (Siglec + Unique)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF07771	e6efiA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07771	ECOD (1.6)
A	Rib	e6efiA2	A: a+b two layers	X: a+b domain in platelet binding protein GspB (From Topology)	H: a+b domain in platelet binding protein GspB (From Topology)	T: a+b domain in platelet binding protein GspB	F: Rib	ECOD (1.6)
B	EUF07771	e6efiB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07771	ECOD (1.6)
B	Rib	e6efiB2	A: a+b two layers	X: a+b domain in platelet binding protein GspB (From Topology)	H: a+b domain in platelet binding protein GspB (From Topology)	T: a+b domain in platelet binding protein GspB	F: Rib	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.890	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (utative)
B	3.10.20.890	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF18938	Atypical Rib domain (aRib)	Atypical Rib domain	This entry contains atypical Rib (aRib) domains. These are found in a variety of bacterial cell surface proteins. These proteins share a conserved motif with the Rib domain (YPDXXD). The structure of the aRib domain has been solved from two proteins ...	This entry contains atypical Rib (aRib) domains. These are found in a variety of bacterial cell surface proteins. These proteins share a conserved motif with the Rib domain (YPDXXD). The structure of the aRib domain has been solved from two proteins, the SrpA adhesin [1] and the GspB adhesin [2]. In these proteins this domain has been termed the unique domain due to its lack of similarity to any other known structures at the time. The aRib domain from SrpA has been shown to mediate a dimer interaction [1]. This family has been added to the E-set clan based on its similarity to the Rib domain, although it does not contain the Ig fold.	Domain
A, B	PF20164	GspA/SrpA SigLec-like domain (GspA_SrpA_N)	GspA/SrpA SigLec-like domain	This domain is an adhesive domain that binds to sialoglycan [1]. A Thr-Arg motif conserved across homologous carbohydrate-binding adhesins that may orient the sialic acid moiety of carbohydrate ligands [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	KxYKxGKxW signal domain protein	cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR026465	Serine-rich repeat adhesion glycoprotein, N-terminal domain	Domain
A, B	IPR022263	KxYKxGKxW signal peptide	Conserved Site
A, B	IPR044024	Atypical Rib domain	Domain
A, B	IPR046785	SrpA-like, SigLec-like domain	Domain
A, B	IPR019931	LPXTG cell wall anchor domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.