PFV intasome - nucleosome strand transfer complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | Core histone-like | 8070527 | 3001387 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Core histone-like | 8070527 | 3001387 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Core histone-like | 8067130 | 3001387 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Core histone-like | 8067130 | 3001387 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Core histone-like | 8066267 | 3001387 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Core histone-like | 8066267 | 3001387 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Histone | e6rnyA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| E | Histone | e6rnyE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| G | Histone_1 | e6rnyG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| C | Histone_1 | e6rnyC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| D | Histone | e6rnyD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| H | Histone | e6rnyH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
| I [auth K] | EUF07571 | e6rnyK3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07571 | ECOD (1.6) |
| I [auth K] | zf-H2C2_like | e6rnyK2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: zf-H2C2_like | ECOD (1.6) |
| I [auth K] | rve | e6rnyK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
| J [auth L] | rve | e6rnyL1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
| L [auth P] | rve | e6rnyP1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
| K [auth O] | EUF07571 | e6rnyO3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07571 | ECOD (1.6) |
| K [auth O] | zf-H2C2_like | e6rnyO2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: zf-H2C2_like | ECOD (1.6) |
| K [auth O] | rve | e6rnyO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
| B | Histone_1 | e6rnyB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
| F | Histone_1 | e6rnyF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family | |
| I [auth K], J [auth L], K [auth O], L [auth P] | PF18103 | Retroviral integrase C-terminal SH3 domain (SH3_11) | Retroviral integrase C-terminal SH3 domain | This is the carboxy-terminal domain (CTD) found in retroviral integrase, an essential retroviral enzyme that binds both termini of linear viral DNA and inserts them into a host cell chromosome. The CTD adopts an SH3-like fold. Each CTD makes contact ... | Domain |
| I [auth K], J [auth L], K [auth O], L [auth P] | PF17921 | Integrase zinc binding domain (Integrase_H2C2) | Integrase zinc binding domain | This zinc binding domain is found in a wide variety of integrase proteins. | Domain |
| I [auth K], J [auth L], K [auth O], L [auth P] | PF00665 | Integrase core domain (rve) | Integrase core domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ... | Domain |
| PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain | |














