6YEG | pdb_00006yeg

Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - Final EM Refinement

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	T6SS-like	8091258	3000580	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Phage_tail_2	e6yegA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
B	Phage_tail_2	e6yegB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
C	Phage_tail_2	e6yegC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
D	Phage_tail_2	e6yegD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
E	Phage_tail_2	e6yegE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
F	Phage_tail_2	e6yegF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
G	Phage_tail_2	e6yegG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
H	Phage_tail_2	e6yegH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
I	Phage_tail_2	e6yegI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
J	Phage_tail_2	e6yegJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
K	Phage_tail_2	e6yegK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)
L	Phage_tail_2	e6yegL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: Phage_tail_2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF06199	Phage tail tube protein (Phage_tail_2)	Phage tail tube protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Tail tube protein gp17.1*	-	viral gene expression viral process viral translational frameshifting viral translation symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral head-tail joining	virus tail, tube virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011855	Phage major tail protein TP901-1	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003961	Fibronectin type III	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.