Structure of the PL6 family alginate lyase Pedsa0632 from Pseudopedobacter saltans
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Chondroitinas_B | e7o7aB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Chondroitinas_B | ECOD (1.6) |
| A | Chondroitinas_B | e7o7aA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Chondroitinas_B | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (utative) |
| A | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF14592 | Chondroitinase B (Chondroitinas_B) | Chondroitinase B | - | Repeat |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR006626 | Parallel beta-helix repeat | Repeat | |
| IPR012334 | Pectin lyase fold | Homologous Superfamily | |
| IPR039513 | PL-6 family | Family | |
| IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |
