Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth I]SCOP2B Superfamily4Fe-4S ferredoxins 8103951 3000020 SCOP2B (2022-06-29)
H [auth A]SCOP2B SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8106938 3002200 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8104293 3002200 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth H]NADHdhe7z7sH1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: NADHdhECOD (1.6)
H [auth A]Oxidored_q4e7z7sA1 A: extended segmentsX: NADH-quinone oxidoreductase subunit A (From Topology)H: NADH-quinone oxidoreductase subunit A (From Topology)T: NADH-quinone oxidoreductase subunit AF: Oxidored_q4ECOD (1.6)
I [auth L]Proton_antipo_Me7z7sL1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
J [auth M]Proton_antipo_Me7z7sM1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
L [auth K]Oxidored_q2e7z7sK1 A: alpha complex topologyX: NADH-quinone oxidoreductase subunit K (From Topology)H: NADH-quinone oxidoreductase subunit K (From Topology)T: NADH-quinone oxidoreductase subunit KF: Oxidored_q2ECOD (1.6)
M [auth J]Oxidored_q3e7z7sJ1 A: extended segmentsX: NADH-quinone oxidoreductase subunit J (From Topology)H: NADH-quinone oxidoreductase subunit J (From Topology)T: NADH-quinone oxidoreductase subunit JF: Oxidored_q3ECOD (1.6)
A [auth F]NADH_4Fe-4Se7z7sF1 A: alpha bundlesX: Bromodomain-likeH: Nqo1C-terminal domain-like (From Topology)T: Nqo1C-terminal domain-likeF: NADH_4Fe-4SECOD (1.6)
A [auth F]F_UNCLASSIFIEDe7z7sF2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Nqo1 middle domain-likeF: F_UNCLASSIFIEDECOD (1.6)
A [auth F]Complex1_51Ke7z7sF3 A: a/b three-layered sandwichesX: Nqo1 FMN-binding domain-like (From Topology)H: Nqo1 FMN-binding domain-like (From Topology)T: Nqo1 FMN-binding domain-likeF: Complex1_51KECOD (1.6)
K [auth N]Proton_antipo_Me7z7sN1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
B [auth E]2Fe-2S_thioredx_Ne7z7sE1 A: alpha bundlesX: NQO2 helical bundle domain (From Topology)H: NQO2 helical bundle domain (From Topology)T: NQO2 helical bundle domainF: 2Fe-2S_thioredx_NECOD (1.6)
B [auth E]2Fe-2S_thioredx_Ce7z7sE2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: 2Fe-2S_thioredx_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth G]PF01568Molydopterin dinucleotide binding domain (Molydop_binding)Molydopterin dinucleotide binding domainThis domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entir ...This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor [1]. This domain corresponds to the C-terminal domain IV in dimethyl sulfoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [2].
Domain
C [auth G]PF04879Molybdopterin oxidoreductase Fe4S4 domain (Molybdop_Fe4S4)Molybdopterin oxidoreductase Fe4S4 domainThis domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1].Domain
C [auth G]PF00384Molybdopterin oxidoreductase (Molybdopterin)Molybdopterin oxidoreductase- Family
C [auth G]PF22117NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Nqo3_Fer4)NADH-quinone oxidoreductase subunit 3, ferredoxin-like domainNADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ...NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contains Fe4-S4 cluster, one of the redox centers of the complex [1-5].
Domain
C [auth G]PF10588NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3)NADH-ubiquinone oxidoreductase-G iron-sulfur binding region- Domain
D [auth C]PF00329Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)Respiratory-chain NADH dehydrogenase, 30 Kd subunit- Family
D [auth C]PF00346Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)Respiratory-chain NADH dehydrogenase, 49 Kd subunit- Family
F [auth I]PF000374Fe-4S binding domain (Fer4)4Fe-4S binding domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.Domain
G [auth H]PF00146NADH dehydrogenase (NADHdh)NADH dehydrogenase- Family
H [auth A]PF00507NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4)NADH-ubiquinone/plastoquinone oxidoreductase, chain 3- Family
I [auth L]PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
I [auth L]PF00662NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N)NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus- Family
J [auth M]PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
L [auth K]PF00420NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2)NADH-ubiquinone/plastoquinone oxidoreductase chain 4L- Family
M [auth J]PF00499NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3)NADH-ubiquinone/plastoquinone oxidoreductase chain 6- Family
A [auth F]PF01512Respiratory-chain NADH dehydrogenase 51 Kd subunit (Complex1_51K)Respiratory-chain NADH dehydrogenase 51 Kd subunit- Family
A [auth F]PF10589NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S)NADH-ubiquinone oxidoreductase-F iron-sulfur binding region- Domain
K [auth N]PF00361Proton-conducting membrane transporter (Proton_antipo_M)Proton-conducting membrane transporter- Family
B [auth E]PF01257Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)Thioredoxin-like [2Fe-2S] ferredoxin- Family
E [auth B]PF01058NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)NADH ubiquinone oxidoreductase, 20 Kd subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth G]NADH-quinone oxidoreductase
D [auth C]NADH-quinone oxidoreductase subunit C/D
F [auth I]NADH-quinone oxidoreductase subunit I
G [auth H]NADH-quinone oxidoreductase subunit H
H [auth A]NADH-quinone oxidoreductase subunit A
I [auth L]NADH dehydrogenase subunit L
J [auth M]NADH dehydrogenase I subunit M
L [auth K]NADH-quinone oxidoreductase subunit K
M [auth J]NADH-quinone oxidoreductase subunit J
A [auth F]NADH-quinone oxidoreductase subunit F
K [auth N]NADH-quinone oxidoreductase subunit N
B [auth E]NADH dehydrogenase I subunit E
E [auth B]NADH-quinone oxidoreductase subunit B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth G]IPR006963Molybdopterin oxidoreductase, 4Fe-4S domainDomain
C [auth G]IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
C [auth G]IPR054351NADH-ubiquinone oxidoreductase, ferredoxin-like domainDomain
C [auth G]IPR010228NADH:ubiquinone oxidoreductase, subunit GFamily
C [auth G]IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
C [auth G]IPR050123Prokaryotic molybdopterin-containing oxidoreductaseFamily
C [auth G]IPR006657Molybdopterin dinucleotide-binding domainDomain
C [auth G]IPR006656Molybdopterin oxidoreductaseDomain
C [auth G]IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
C [auth G]IPR000283NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved siteConserved Site
C [auth G]IPR019574NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur bindingDomain
D [auth C]IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
D [auth C]IPR023062NADH dehydrogenase, subunit CDFamily
D [auth C]IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved siteConserved Site
D [auth C]IPR029014[NiFe]-hydrogenase, large subunitHomologous Superfamily
D [auth C]IPR022885NAD(P)H-quinone oxidoreductase subunit D/HFamily
D [auth C]IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
D [auth C]IPR001135NADH-quinone oxidoreductase, subunit DDomain
D [auth C]IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved siteConserved Site
D [auth C]IPR010218NADH dehydrogenase, subunit CFamily
F [auth I]IPR010226NADH-quinone oxidoreductase, chain IFamily
F [auth I]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
F [auth I]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
G [auth H]IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HFamily
G [auth H]IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved siteConserved Site
H [auth A]IPR023043NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastidFamily
H [auth A]IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3Family
H [auth A]IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyHomologous Superfamily
I [auth L]IPR003945NADH-quinone oxidoreductase, chain 5-likeFamily
I [auth L]IPR001516NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminalDomain
I [auth L]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitDomain
I [auth L]IPR018393NADH-plastoquinone oxidoreductase, chain 5 subgroupFamily
J [auth M]IPR003918NADH:ubiquinone oxidoreductaseFamily
J [auth M]IPR010227NADH-quinone oxidoreductase, chain M/4Family
J [auth M]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitDomain
L [auth K]IPR001133NADH-ubiquinone oxidoreductase chain 4L/KFamily
L [auth K]IPR039428NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-likeFamily
M [auth J]IPR042106NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJHomologous Superfamily
M [auth J]IPR001457NADH:ubiquinone/plastoquinone oxidoreductase, chain 6Family
A [auth F]IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainDomain
A [auth F]IPR011537NADH ubiquinone oxidoreductase, F subunitFamily
A [auth F]IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteConserved Site
A [auth F]IPR037225NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyHomologous Superfamily
A [auth F]IPR037207NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyHomologous Superfamily
A [auth F]IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainDomain
K [auth N]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitDomain
K [auth N]IPR010096NAD(P)H-quinone oxidoreductase, subunit N/subunit 2Family
B [auth E]IPR041921NADH-quinone oxidoreductase subunit E, N-terminalHomologous Superfamily
B [auth E]IPR042128NuoE domainDomain
B [auth E]IPR002023NADH-quinone oxidoreductase subunit E-likeFamily
B [auth E]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
E [auth B]IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain
E [auth B]IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily