Annotations: 8AMV

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rep_2_C	e8amvA2	A: alpha arrays	X: HTH	H: Replication protein RepB C-terminal domain (From Topology)	T: Replication protein RepB C-terminal domain	F: Rep_2_C	ECOD (1.6)
A	Rep_2	e8amvA1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)
B	Rep_2_C	e8amvB1	A: alpha arrays	X: HTH	H: Replication protein RepB C-terminal domain (From Topology)	T: Replication protein RepB C-terminal domain	F: Rep_2_C	ECOD (1.6)
B	Rep_2	e8amvB2	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)
C	Rep_2_C	e8amvC1	A: alpha arrays	X: HTH	H: Replication protein RepB C-terminal domain (From Topology)	T: Replication protein RepB C-terminal domain	F: Rep_2_C	ECOD (1.6)
C	Rep_2	e8amvC2	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)
D	Rep_2_C	e8amvD1	A: alpha arrays	X: HTH	H: Replication protein RepB C-terminal domain (From Topology)	T: Replication protein RepB C-terminal domain	F: Rep_2_C	ECOD (1.6)
D	Rep_2	e8amvD2	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)
E	Rep_2_C	e8amvE2	A: alpha arrays	X: HTH	H: Replication protein RepB C-terminal domain (From Topology)	T: Replication protein RepB C-terminal domain	F: Rep_2_C	ECOD (1.6)
E	Rep_2	e8amvE1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)
F	Rep_2_C	e8amvF1	A: alpha arrays	X: HTH	H: Replication protein RepB C-terminal domain (From Topology)	T: Replication protein RepB C-terminal domain	F: Rep_2_C	ECOD (1.6)
F	Rep_2	e8amvF2	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Origin of replication-binding domains	F: Rep_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)
B	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (utative)
C	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)
C	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (utative)
D	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)
D	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (utative)
E	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)
E	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (utative)
F	3.40.1310.30	Alpha Beta	3-Layer(aba) Sandwich	Replication Protein E1	Chain: A,	CATH (utative)
F	1.10.10.1480	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Plasmid replication protein	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Replication protein RepB	DNA binding binding nucleic acid binding identical protein binding protein binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on DNA DNA topoisomerase activity catalytic activity, acting on a nucleic acid catalytic activity macromolecular conformation isomerase activity	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	intracellular anatomical structure cellular anatomical structure extrachromosomal circular DNA extrachromosomal DNA

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR041919	Plasmid replication protein, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002631	Plasmid replication protein, origin binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.