| IPR000208 | RNA-directed RNA polymerase, fingers/palm subdomains, flavivirus | Domain |
| IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
| IPR001122 | Capsid protein C, flavivirus | Domain |
| IPR027287 | Glycoprotein E, immunoglobulin-like domain, flavivirus | Domain |
| IPR014412 | Genome polyprotein, Flavivirus | Family |
| IPR036253 | Flavivirus glycoprotein, central and dimerisation domain superfamily | Homologous Superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
| IPR026490 | mRNA cap 0/1 methyltransferase | Domain |
| IPR009003 | Peptidase S1, PA clan | Homologous Superfamily |
| IPR001650 | Helicase, C-terminal domain-like | Domain |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain |
| IPR013755 | Flaviviral glycoprotein E, central domain, subdomain 1 | Homologous Superfamily |
| IPR000752 | Flavivirus non-structural protein NS2A | Domain |
| IPR047530 | RNA-dependent RNA polymerase, flavivirus | Domain |
| IPR049486 | Flavivridae NS3 helicase, C-terminal helical domain | Domain |
| IPR046811 | RNA-directed RNA polymerase, thumb subdomain, flavivirus | Domain |
| IPR038055 | Flaviviral glycoprotein E, dimerisation domain | Homologous Superfamily |
| IPR002877 | Ribosomal RNA methyltransferase, FtsJ domain | Domain |
| IPR038302 | Envelope glycoprotein M superfamily, flavivirus | Homologous Superfamily |
| IPR000069 | Envelope glycoprotein M, flavivirus | Domain |
| IPR011492 | Non-structural protein NS3-like, DEAD box helicase, flavivirus | Domain |
| IPR038345 | Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamily | Homologous Superfamily |
| IPR038688 | Flavivirus polyprotein propeptide superfamily | Homologous Superfamily |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily |
| IPR026470 | Flavivirus envelope glycoprotein E, Stem/Anchor domain | Domain |
| IPR011998 | Envelope glycoprotein E, central and dimerisation domain, flavivirus | Domain |
| IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
| IPR000404 | Flavivirus non-structural protein NS4A | Domain |
| IPR000487 | Non-structural protein NS2B, flavivirus | Domain |
| IPR001528 | Flavivirus non-structural protein NS4B | Domain |
| IPR001157 | Non-structural protein NS1, flavivirus | Domain |
| IPR013756 | Flaviviral glycoprotein E, central domain, subdomain 2 | Homologous Superfamily |
| IPR001850 | Non-structural protein NS3, peptidase S7, flavivirus | Domain |
| IPR000336 | Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily | Homologous Superfamily |
| IPR002535 | Flavivirus polyprotein propeptide | Domain |
| IPR007094 | RNA-directed RNA polymerase, catalytic domain | Domain |
| IPR000208 | RNA-directed RNA polymerase, fingers/palm subdomains, flavivirus | Domain |
| IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
| IPR001122 | Capsid protein C, flavivirus | Domain |
| IPR027287 | Glycoprotein E, immunoglobulin-like domain, flavivirus | Domain |
| IPR014412 | Genome polyprotein, Flavivirus | Family |
| IPR036253 | Flavivirus glycoprotein, central and dimerisation domain superfamily | Homologous Superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
| IPR026490 | mRNA cap 0/1 methyltransferase | Domain |
| IPR009003 | Peptidase S1, PA clan | Homologous Superfamily |
| IPR001650 | Helicase, C-terminal domain-like | Domain |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain |
| IPR013755 | Flaviviral glycoprotein E, central domain, subdomain 1 | Homologous Superfamily |
| IPR000752 | Flavivirus non-structural protein NS2A | Domain |
| IPR047530 | RNA-dependent RNA polymerase, flavivirus | Domain |
| IPR049486 | Flavivridae NS3 helicase, C-terminal helical domain | Domain |
| IPR046811 | RNA-directed RNA polymerase, thumb subdomain, flavivirus | Domain |
| IPR038055 | Flaviviral glycoprotein E, dimerisation domain | Homologous Superfamily |
| IPR002877 | Ribosomal RNA methyltransferase, FtsJ domain | Domain |
| IPR038302 | Envelope glycoprotein M superfamily, flavivirus | Homologous Superfamily |
| IPR000069 | Envelope glycoprotein M, flavivirus | Domain |
| IPR011492 | Non-structural protein NS3-like, DEAD box helicase, flavivirus | Domain |
| IPR038345 | Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamily | Homologous Superfamily |
| IPR038688 | Flavivirus polyprotein propeptide superfamily | Homologous Superfamily |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily |
| IPR026470 | Flavivirus envelope glycoprotein E, Stem/Anchor domain | Domain |
| IPR011998 | Envelope glycoprotein E, central and dimerisation domain, flavivirus | Domain |
| IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
| IPR000404 | Flavivirus non-structural protein NS4A | Domain |
| IPR000487 | Non-structural protein NS2B, flavivirus | Domain |
| IPR001528 | Flavivirus non-structural protein NS4B | Domain |
| IPR001157 | Non-structural protein NS1, flavivirus | Domain |
| IPR013756 | Flaviviral glycoprotein E, central domain, subdomain 2 | Homologous Superfamily |
| IPR001850 | Non-structural protein NS3, peptidase S7, flavivirus | Domain |
| IPR000336 | Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily | Homologous Superfamily |
| IPR002535 | Flavivirus polyprotein propeptide | Domain |
| IPR007094 | RNA-directed RNA polymerase, catalytic domain | Domain |