1G3P
CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAINS OF BACTERIOPHAGE MINOR COAT PROTEIN G3P
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | EQUAL VOLUMES OF THE PROTEIN SOLUTION (10 MG/ML) BUFFERED WITH 50 MM PIPES PH 6.5 AND THE PRECIPITANT (30% PEG 4000, 0.2 M AMMONIUM SULFATE, 2 MM DTT) WERE MIXED AND EQUILIBRATED (IN THE HANGING DROP SETUP) AGAINST THE PRECIPITANT., vapor diffusion - hanging drop |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.34 | 40 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 48.681 | α = 90 |
b = 48.681 | β = 90 |
c = 153.222 | γ = 120 |
Symmetry | |
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Space Group | P 32 2 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | IMAGE PLATE | MAR scanner 345 mm plate | COLLIMATOR | 1997-09-03 | M |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | NSLS BEAMLINE X9B | NSLS | X9B |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 1.46 | 22 | 99.8 | 0.034 | 27 | 7.53 | 37511 | -3 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1.46 | 1.51 | 99.2 | 0.11 | 8.5 | 5.5 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | SIRAS (USING MAD X-RAY DATA) | THROUGHOUT | 1.46 | 8 | 2 | 36895 | 3785 | 97.6 | 0.187 | 0.187 | 0.225 | RANDOM | 16.1 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
x_dihedral_angle_d | 27.01 |
x_mcbond_it | 2.34 |
x_scbond_it | 2.34 |
x_mcangle_it | 2.07 |
x_scangle_it | 2.07 |
x_angle_deg | 1.584 |
x_improper_angle_d | 1.265 |
x_bond_d | 0.009 |
x_bond_d_na | |
x_bond_d_prot |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 1890 |
Nucleic Acid Atoms | |
Solvent Atoms | 312 |
Heterogen Atoms | 20 |
Software
Software | |
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Software Name | Purpose |
X-PLOR | refinement |
SCALEPACK | data scaling |
SHELX-97 | model building |
SHELX-97 | refinement |
DENZO | data reduction |
SHELX-97 | phasing |