X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.528227% PEG 3350, 30 mM Ammonium acetate, 100 mM Bis Tris pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 282K
Crystal Properties
Matthews coefficientSolvent content
2.2344.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.727α = 90
b = 45.063β = 115.23
c = 84.006γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-10-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.97180SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5330.7199.80.05770.045583455697
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.531.6599.60.37840.29594.23.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.5330.715583454141155699.750.171460.171460.170570.20098RANDOM17.246
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.121-0.60.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.591
r_dihedral_angle_4_deg20.67
r_dihedral_angle_3_deg12.526
r_dihedral_angle_1_deg5.831
r_scangle_it3.906
r_scbond_it2.833
r_mcangle_it1.89
r_angle_refined_deg1.743
r_angle_other_deg1.533
r_mcbond_it1.376
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.591
r_dihedral_angle_4_deg20.67
r_dihedral_angle_3_deg12.526
r_dihedral_angle_1_deg5.831
r_scangle_it3.906
r_scbond_it2.833
r_mcangle_it1.89
r_angle_refined_deg1.743
r_angle_other_deg1.533
r_mcbond_it1.376
r_mcbond_other0.4
r_symmetry_vdw_other0.338
r_nbd_refined0.226
r_symmetry_hbond_refined0.224
r_nbd_other0.193
r_nbtor_refined0.188
r_xyhbond_nbd_refined0.188
r_symmetry_vdw_refined0.149
r_chiral_restr0.113
r_nbtor_other0.091
r_bond_refined_d0.019
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2803
Nucleic Acid Atoms
Solvent Atoms330
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
PHASERphasing