2JMF | pdb_00002jmf

Solution structure of the Su(dx) WW4- Notch PY peptide complex

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
2	2D 1H-15N HSQC	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
3	3D HNCO	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
4	3D HNCO	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
5	3D HNCA	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
6	3D HNCA	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
7	3D HNCACB	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
8	3D HNCACB	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
9	3D HN(CO)CA	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
10	3D HN(CO)CA	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
11	3D HCCH-TOCSY	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
12	3D HCCH-TOCSY	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
13	3D 1H-15N NOESY	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
14	3D 1H-15N NOESY	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
15	3D 1H-15N TOCSY	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
16	3D 1H-15N TOCSY	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
17	3D 1H-13C NOESY	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
18	3D 1H-13C NOESY	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
19	2D 1H-13C HSQC	0.6 mM [U-13C, U-15N] WW4 domain from Su(dx), 2.0 mM Notch, 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293
20	2D 1H-13C HSQC	3.0 mM [U-13C, U-15N] Notch, 0.8 mM WW4 domain from Su(dx), 45 mM sodium chloride, 9 mM DTT, 0.9 mM EDTA, 45 mM Arginine, 45 mM Glutamate, 90 % H2O, 10 % D2O	90% H2O/10% D2O		6.75	ambient	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AMX	600

NMR Refinement
Method	Details	Software
simulated annealing	energy minimisation performed using AMBER	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	all calculated structures submitted
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	data analysis	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	structure solution	CARA		Keller and Wuthrich
3	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
4	refinement	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
5	structure solution	NMRView		Johnson
6	refinement	Amber		Case, Darden, Cheatham, Simmerling, Wang, Duke