ShB peptide structure bound to negatively charged lipid-bilayer after Molecular Dynamics refinement
SOLID-STATE NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 13C-13C PARISxy | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
| 2 | 13c-13C PDSD | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
| 3 | SPECIFIC-NCA | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
| 4 | SPECIFIC-NCO | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
| 5 | CHHC | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
| 6 | NHHC | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
| 7 | HHC | 7 mM DOPC, 3 mM Cardiolipin | H2O/Lipid | 0.3 | 4.0 | 277-283 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 500 |
| 2 | Bruker | AVANCE | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, molecular dynamics | GROMOS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 1 |
| Conformers Submitted Total Number | 1 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | GROMOS | 53a6 | van Gunsteren and Berendsen |
| 2 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Rea | |
