3HVH

Rat catechol O-methyltransferase in complex with a catechol-type, N6-methyladenine-containing bisubstrate inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROPVAPOR DIFFUSION, SITTING DROP
Crystal Properties
Matthews coefficientSolvent content
2.2645.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.587α = 90
b = 56.248β = 90
c = 78.546γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2009-04-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.331.0297.80.04718.26.85487113.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3268.60.52322.91007

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.331.0248922257991.880.130730.129540.15293RANDOM12.915
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.490.77-0.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.809
r_dihedral_angle_4_deg16.758
r_dihedral_angle_3_deg12.421
r_sphericity_free9.827
r_dihedral_angle_1_deg5.546
r_scangle_it5.345
r_sphericity_bonded4.381
r_scbond_it3.757
r_mcangle_it2.682
r_mcbond_it1.838
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.809
r_dihedral_angle_4_deg16.758
r_dihedral_angle_3_deg12.421
r_sphericity_free9.827
r_dihedral_angle_1_deg5.546
r_scangle_it5.345
r_sphericity_bonded4.381
r_scbond_it3.757
r_mcangle_it2.682
r_mcbond_it1.838
r_rigid_bond_restr1.757
r_angle_refined_deg1.756
r_angle_other_deg0.995
r_mcbond_other0.881
r_chiral_restr0.116
r_bond_refined_d0.018
r_gen_planes_refined0.01
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1679
Nucleic Acid Atoms
Solvent Atoms286
Heterogen Atoms81

Software

Software
Software NamePurpose
COMOphasing
REFMACrefinement
XDSdata reduction
SADABSdata scaling