X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293100mM PCB buffer pH7.0, 25% (w/v) PEG 1500, 50mM GlcN
Crystal Properties
Matthews coefficientSolvent content
2.1643.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.585α = 90
b = 119.991β = 98.66
c = 85.902γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90CCDRAYONIX MX300HE2016-05-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL44XU0.9SPring-8BL44XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.275092.520.82.9370867

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.27203520511871692.410.132510.130260.17543RANDOM14.298
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.18-0.560.69-0.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.097
r_sphericity_free30.947
r_dihedral_angle_4_deg19.873
r_sphericity_bonded12.735
r_dihedral_angle_3_deg12.248
r_dihedral_angle_1_deg6.912
r_scangle_other5.285
r_rigid_bond_restr5.267
r_long_range_B_refined4.906
r_long_range_B_other4.906
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.097
r_sphericity_free30.947
r_dihedral_angle_4_deg19.873
r_sphericity_bonded12.735
r_dihedral_angle_3_deg12.248
r_dihedral_angle_1_deg6.912
r_scangle_other5.285
r_rigid_bond_restr5.267
r_long_range_B_refined4.906
r_long_range_B_other4.906
r_scbond_it4.691
r_scbond_other4.691
r_mcangle_other2.482
r_mcangle_it2.477
r_angle_refined_deg2.444
r_mcbond_it2.044
r_mcbond_other2.034
r_angle_other_deg1.216
r_chiral_restr0.169
r_bond_refined_d0.028
r_gen_planes_refined0.015
r_gen_planes_other0.003
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12794
Nucleic Acid Atoms
Solvent Atoms1282
Heterogen Atoms172

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing