SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 300 uM 1H DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3') | 90% H2O/10% D2O | 10 mM NaCl mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 700 |
| 2 | 2D 1H-1H TOCSY | 300 uM 1H DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3') | 90% H2O/10% D2O | 10mM NaCl mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 700 |
| 4 | 2D 1H-1H NOESY | 300 uM 1H DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3') | 100% D2O | 10mM NaCl mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 700 |
| 5 | 2D 1H-1H TOCSY | 300 uM 1H DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3') | 100% D2O | 10mM NaCl mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 700 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 4 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | data analysis | TopSpin | 3.0 | Bruker Biospin |
| 2 | peak picking | Sparky | Goddard | |
| 3 | chemical shift assignment | Sparky | Goddard | |
| 4 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 5 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
