7OMI

Bs164 in complex with mannocyclophellitol epoxide

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6T7G

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1 M Ammonium tartrate pH 6.5 , 14 % PEG 3,350

Crystal Properties
Matthews coefficient	Solvent content
2.55	51.79

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 69.452	α = 92.292
b = 104.426	β = 97.351
c = 170.781	γ = 106.554

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	80	PIXEL	DECTRIS EIGER2 XE 16M		2021-04-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.976284	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.76	65.87	97.2	0.994	7.6	3.1		438305

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.76	1.79			0.302

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6T7G	1.76	65.87	438213	22062	97.15	0.233	0.2314	0.2609	34.914

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.461	1.673	-0.551	0.165	0.088	-2.376

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.573
r_dihedral_angle_4_deg	20.188
r_dihedral_angle_3_deg	14.339
r_dihedral_angle_1_deg	7.347
r_lrange_it	6.06
r_lrange_other	6.057
r_scangle_it	4.985
r_scangle_other	4.985
r_mcangle_other	3.777
r_mcangle_it	3.776
r_scbond_it	3.433
r_scbond_other	3.433
r_mcbond_it	2.825
r_mcbond_other	2.825
r_angle_other_deg	2.311
r_angle_refined_deg	1.422
r_nbd_other	0.264
r_symmetry_xyhbond_nbd_other	0.221
r_symmetry_nbd_refined	0.212
r_symmetry_nbd_other	0.209
r_nbd_refined	0.2
r_symmetry_xyhbond_nbd_refined	0.194
r_nbtor_refined	0.17
r_xyhbond_nbd_refined	0.137
r_chiral_restr	0.071
r_symmetry_nbtor_other	0.067
r_bond_other_d	0.035
r_xyhbond_nbd_other	0.026
r_gen_planes_other	0.01
r_bond_refined_d	0.008
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	31540
Nucleic Acid Atoms
Solvent Atoms	2135
Heterogen Atoms	314

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
xia2	data scaling
REFMAC	phasing