8BN7

CjCel5C endo-glucanase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5293PS: 12 mg/mL in 20 mM MOPS 7.5, 50 mM NaCl 1.5:1 with WS containing 30% MPD, 6% PEG4000, with seeding from higher [PEG] crystals.
Crystal Properties
Matthews coefficientSolvent content
2.6553.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 126.332α = 90
b = 175.709β = 90
c = 115.283γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 16M2021-03-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.18102.57910.2640.2740.0740.9968.313.5608431
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.182.2299.93.7843.9261.0440.35113.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4HTY2.182102.5760567299190.5550.1890.18740.22620.0539.267
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.7831.5-0.717
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.952
r_dihedral_angle_3_deg16.39
r_dihedral_angle_4_deg15.423
r_dihedral_angle_1_deg8.417
r_lrange_it7.252
r_lrange_other7.239
r_scangle_other5.799
r_scangle_it5.798
r_mcangle_other5.296
r_mcangle_it5.295
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.952
r_dihedral_angle_3_deg16.39
r_dihedral_angle_4_deg15.423
r_dihedral_angle_1_deg8.417
r_lrange_it7.252
r_lrange_other7.239
r_scangle_other5.799
r_scangle_it5.798
r_mcangle_other5.296
r_mcangle_it5.295
r_scbond_it4.057
r_scbond_other4.057
r_mcbond_it3.76
r_mcbond_other3.739
r_angle_refined_deg1.627
r_angle_other_deg1.311
r_symmetry_xyhbond_nbd_refined0.214
r_nbd_refined0.203
r_nbd_other0.191
r_symmetry_nbd_other0.178
r_nbtor_refined0.174
r_symmetry_nbd_refined0.148
r_xyhbond_nbd_refined0.136
r_chiral_restr0.083
r_symmetry_nbtor_other0.082
r_ncsr_local_group_20.064
r_ncsr_local_group_10.06
r_ncsr_local_group_30.056
r_bond_refined_d0.009
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8122
Nucleic Acid Atoms
Solvent Atoms180
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
BUCCANEERphasing