2YNK | pdb_00002ynk


D12: DODECANE

D12 is a Ligand Of Interest in 2YNK designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2YNK_D12_A_1008Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2YNK_D12_A_1008Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2YNK_D12_A_1008 33% 86% 0.224 0.9040.32 0.4 - -00100%1
2YNK_D12_A_1004 32% 88% 0.198 0.870.45 0.22 - -00100%1
2YNK_D12_A_1005 28% 88% 0.214 0.8660.36 0.31 - -10100%1
2YNK_D12_A_1002 22% 86% 0.218 0.8330.36 0.35 - -00100%1
2YNK_D12_A_1003 22% 89% 0.247 0.8620.37 0.28 - -10100%1
2YNK_D12_A_1007 21% 85% 0.199 0.8040.35 0.39 - -00100%1
2YNK_D12_A_1006 9% 86% 0.275 0.7630.35 0.36 - -00100%1
3UTY_D12_A_501 99% 67% 0.058 0.9880.22 1.03 - 100100%1
3UTX_D12_B_401 94% 12% 0.076 0.9771.73 2.32 2 500100%1
6W84_D12_A_404 75% 70% 0.118 0.9510.29 0.85 - -00100%1
4Y9H_D12_A_305 70% 83% 0.094 0.9090.26 0.52 - -00100%1
3HAS_D12_A_401 69% 0% 0.096 0.913.48 6.45 6 500100%1