UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3MJR designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3MJR_UDP_B_261 | 79% | 34% | 0.126 | 0.971 | 0.98 | 1.59 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3MJR_UDP_A_261 | 78% | 34% | 0.117 | 0.961 | 0.95 | 1.64 | - | 5 | 2 | 0 | 100% | 1 |
| 3MJR_UDP_D_261 | 45% | 35% | 0.133 | 0.864 | 0.91 | 1.64 | - | 5 | 1 | 0 | 100% | 1 |
| 3MJR_UDP_C_501 | 42% | 35% | 0.154 | 0.874 | 0.94 | 1.6 | - | 5 | 0 | 0 | 100% | 1 |
| 2ZI7_UDP_B_301 | 99% | 16% | 0.051 | 0.982 | 1.48 | 2.19 | 5 | 10 | 0 | 0 | 100% | 1 |
| 2ZI6_UDP_A_4301 | 97% | 26% | 0.071 | 0.989 | 1.16 | 1.84 | 1 | 8 | 1 | 0 | 100% | 1 |
| 7ZIA_UDP_A_301 | 96% | 30% | 0.077 | 0.988 | 1.15 | 1.65 | 3 | 6 | 0 | 0 | 100% | 1 |
| 2ZIA_UDP_B_301 | 96% | 27% | 0.075 | 0.984 | 1.18 | 1.72 | 4 | 7 | 0 | 0 | 100% | 1 |
| 4Q1E_UDP_B_303 | 96% | 34% | 0.078 | 0.985 | 1.14 | 1.46 | 3 | 4 | 1 | 0 | 100% | 1 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
