GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4LYF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4LYF_GDP_A_201 | 100% | 41% | 0.042 | 0.985 | 1.01 | 1.26 | 2 | 3 | 0 | 0 | 100% | 1 |
| 4LYF_GDP_B_202 | 99% | 44% | 0.046 | 0.983 | 1.02 | 1.13 | 2 | 3 | 0 | 0 | 100% | 1 |
| 4LYF_GDP_C_201 | 99% | 42% | 0.049 | 0.979 | 1.18 | 1.07 | 2 | 1 | 0 | 0 | 100% | 1 |
| 5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
| 6TAN_GDP_A_201 | 100% | 55% | 0.046 | 0.99 | 0.88 | 0.86 | - | 1 | 0 | 0 | 100% | 1 |
| 7RT1_GDP_A_201 | 100% | 53% | 0.048 | 0.992 | 0.96 | 0.87 | 2 | 1 | 0 | 0 | 100% | 1 |
| 7A1X_GDP_A_201 | 100% | 27% | 0.047 | 0.989 | 0.92 | 1.98 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5W22_GDP_B_201 | 99% | 48% | 0.05 | 0.99 | 0.76 | 1.24 | 1 | 3 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
