Ligand validation:5YCI


HEM: PROTOPORPHYRIN IX CONTAINING FE

HEM is a Ligand Of Interest in 5YCI designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YCI_HEM_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YCI_HEM_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YCI_HEM_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5YCI_HEM_A_201 87% 21% 0.097 0.971.87 1.47 7 800100%1
5YCI_HEM_B_201 81% 18% 0.115 0.9681.82 1.75 5 1220100%1
3VM9_HEM_A_154 99% 32% 0.058 0.9931.23 1.46 3 700100%1
2FRJ_HEM_X_154 98% 16% 0.061 0.9871.77 1.88 7 1000100%1
2V1F_HEM_A_1154 98% 21% 0.066 0.9891.78 1.55 4 400100%0.9535
8R8W_HEM_A_201 98% 31% 0.067 0.9891.44 1.32 3 600100%0.64
8R8X_HEM_A_201 98% 31% 0.067 0.9891.44 1.32 3 600100%0.64
1FHF_HEM_A_350 100% 17% 0.021 0.9971.8 1.82 12 340100%1
1HBH_HEM_A_144 100% 11% 0.019 0.9971.48 2.62 5 1250100%1
2D2C_HEM_A_301 100% 9% 0.024 0.9992.2 2.28 9 1240100%1
3EJD_HEM_B_405 100% 17% 0.018 0.9981.9 1.69 6 820100%1
3EJE_HEM_B_405 100% 18% 0.022 0.9971.91 1.6 8 810100%1