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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Cascio, D."

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Search Summary

This query matches 319 Structures.

Refinements

Structure Determination Methodology

experimental (319)

Scientific Name of Source Organism

	Homo sapiens (85)
	Escherichia coli K-12 (34)
	Tequatrovirus T4 (28)
	synthetic construct (13)
	Mycobacterium tuberculosis (12)
	Escherichia coli (11)
	Saccharomyces cerevisiae (9)
	Lambdavirus lambda (6)
	Pyrobaculum aerophilum (6)
	Thiomonas intermedia K12 (6)

More...

Taxonomy

	Eukaryota (134)
	Bacteria (128)
	Duplodnaviria (35)
	Archaea (21)
	other sequences (13)
	Riboviria (4)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (288)
	ELECTRON CRYSTALLOGRAPHY (28)
	EPR (4)
	SOLUTION NMR (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (314)
	DNA (32)
	RNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (6)
	1.0 - 1.5 (48)
	1.5 - 2.0 (109)
	2.0 - 2.5 (71)
	2.5 - 3.0 (53)
	3.0 - 3.5 (22)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	1990 - 1994 (11)
	1995 - 1999 (5)
	2000 - 2004 (16)
	2005 - 2009 (40)
	2010 - 2014 (97)
	2015 - 2019 (122)
	2020 - 2024 (27)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (60)
	Oxidoreductases (15)
	Lyases (14)
	Transferases (14)
	Isomerases (1)
	Ligases (1)

Membrane Protein Annotation

	OPM (3)
	PDBTM (2)
	MemProtMD (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (136)
	Cyclic (116)
	Dihedral (55)
	Helical (13)
	Tetrahedral (4)
	Icosahedral (3)
	Octahedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (55)
	All alpha proteins (37)
	All beta proteins (46)
	Alpha and beta proteins (a/b) (33)
	Artifacts (28)
	Small proteins (5)
	Designed proteins (3)
	Membrane and cell surface proteins and peptides (4)

AllSelected

1 to 25 of 319 Structures

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126D \| pdb_0000126d	Download File View File

CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS

Goodsell, D.S., Kopka, M.L., Cascio, D., Dickerson, R.E.

(1993) Proc Natl Acad Sci U S A 90: 2930-2934

Released	1993-10-15
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(CPAPTPGPGPCPCPAPTPG)-3') (nucleic acid)

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158D \| pdb_0000158d	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA

Grzeskowiak, K., Goodsell, D.S., Kaczor-Grzeskowiak, M., Cascio, D., Dickerson, R.E.

(1993) Biochemistry 32: 8923-8931

Released	1994-05-31
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	DNA (5'-D(CPCPAPAPGPCPTPTPGPG)-3') (nucleic acid)
Unique Ligands	CA

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1A04 \| pdb_00001a04	Download File View File

THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM

Baikalov, I., Schroder, I., Kaczor-Grzeskowiak, M., Cascio, D., Gunsalus, R.P., Dickerson, R.E.

(1998) Biochemistry 37: 3665-3676

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL (protein)

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1BGC \| pdb_00001bgc	Download File View File

CRYSTAL STRUCTURE OF CANINE AND BOVINE GRANULOCYTE-COLONY STIMULATING FACTOR (G-CSF)

Lovejoy, B., Cascio, D., Eisenberg, D.

(1993) J Mol Biology 234: 640-653

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	GRANULOCYTE COLONY-STIMULATING FACTOR (protein)

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1BGD \| pdb_00001bgd	Download File View File

CRYSTAL STRUCTURE OF CANINE AND BOVINE GRANULOCYTE-COLONY STIMULATING FACTOR (G-CSF)

Lovejoy, B., Cascio, D., Eisenberg, D.

(1993) J Mol Biology 234: 640-653

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Canis lupus familiaris
Macromolecule	GRANULOCYTE COLONY-STIMULATING FACTOR (protein)

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1BGE \| pdb_00001bge	Download File View File

CRYSTAL STRUCTURE OF CANINE AND BOVINE GRANULOCYTE-COLONY STIMULATING FACTOR (G-CSF)

Lovejoy, B., Cascio, D., Eisenberg, D.

(1993) J Mol Biology 234: 640-653

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Canis lupus familiaris
Macromolecule	GRANULOCYTE COLONY-STIMULATING FACTOR (protein)

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1BYZ \| pdb_00001byz	Download File View File

DESIGNED PEPTIDE ALPHA-1, P1 FORM

Prive, G.G., Anderson, D.H., Wesson, L., Cascio, D., Eisenberg, D.

(1999) Protein Sci 8: 1400-1409

Released	1998-10-28
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	synthetic construct
Macromolecule	PROTEIN (SYNTHETIC DESIGNED PEPTIDE "ALPHA-1") (protein)
Unique Ligands	CL, ETA, MPD, MRD

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1COS \| pdb_00001cos	Download File View File

CRYSTAL STRUCTURE OF A SYNTHETIC TRIPLE-STRANDED ALPHA-HELICAL BUNDLE

Lovejoy, B., Choe, S., Cascio, D., Mcrorie, D.K., Degrado, W., Eisenberg, D.

(1993) Science 259: 1288-1293

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	COILED SERINE (protein)

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1D30 \| pdb_00001d30	Download File View File

THE STRUCTURE OF DAPI BOUND TO DNA

Larsen, T., Goodsell, D.S., Cascio, D., Grzeskowiak, K., Dickerson, R.E.

(1989) J Biomol Struct Dyn 7: 477-491

Released	1992-04-15
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	DAP

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1F0M \| pdb_00001f0m	Download File View File

MONOMERIC STRUCTURE OF THE HUMAN EPHB2 SAM (STERILE ALPHA MOTIF) DOMAIN

Thanos, C.D., Faham, S., Goodwill, K.E., Cascio, D., Phillips, M., Bowie, J.U.

(1999) J Biological Chem 274: 37301-37306

Released	2000-07-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	EPHRIN TYPE-B RECEPTOR 2 (protein)

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1F1E \| pdb_00001f1e	Download File View File

CRYSTAL STRUCTURE OF THE HISTONE FROM METHANOPYRUS KANDLERI

Fahrner, R.L., Cascio, D., Lake, J.A., Slesarev, A.

(2001) Protein Sci 10: 2002-2007

Released	2001-10-31
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Methanopyrus kandleri
Macromolecule	HISTONE FOLD PROTEIN (protein)
Unique Ligands	CL

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1I8F \| pdb_00001i8f	Download File View File

THE CRYSTAL STRUCTURE OF A HEPTAMERIC ARCHAEAL SM PROTEIN: IMPLICATIONS FOR THE EUKARYOTIC SNRNP CORE

Mura, C., Cascio, D., Sawaya, M.R., Eisenberg, D.

(2001) Proc Natl Acad Sci U S A 98: 5532-5537

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	PUTATIVE SNRNP SM-LIKE PROTEIN (protein)
Unique Ligands	GOL

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1JRK \| pdb_00001jrk	Download File View File

Crystal Structure of a Nudix Protein from Pyrobaculum aerophilum Reveals a Dimer with Intertwined Beta Sheets

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	Nudix homolog (protein)
Unique Ligands	MPD

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1K26 \| pdb_00001k26	Download File View File

Structure of a Nudix Protein from Pyrobaculum aerophilum Solved by the Single Wavelength Anomolous Scattering Method

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	NUDIX HOMOLOG (protein)
Unique Ligands	ACY, GOL, IR3, NI, SO4

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1K2E \| pdb_00001k2e	Download File View File

crystal structure of a nudix protein from Pyrobaculum aerophilum

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	NUDIX HOMOLOG (protein)
Unique Ligands	ACY, GOL, NI, SO4

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1L9L \| pdb_00001l9l	Download File View File

GRANULYSIN FROM HUMAN CYTOLYTIC T LYMPHOCYTES

Anderson, D.H., Sawaya, M.R., Cascio, D., Ernst, W., Krensky, A., Modlin, R., Eisenberg, D.

(2002) J Mol Biology 325: 355-365

Released	2002-11-06
Method	X-RAY DIFFRACTION 0.92 Å
Organisms	Homo sapiens
Macromolecule	Granulysin (protein)
Unique Ligands	EOH, MPO, SO4

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1LMI \| pdb_00001lmi	Download File View File

1.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A SECRETED PROTEIN FROM MYCOBACTERIUM TUBERCULOSIS-MPT63

Goulding, C.W., Parseghian, A., Sawaya, M.R., Cascio, D., Apostol, M., Gennaro, M.L., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2002) Protein Sci 11: 2887-2893

Released	2002-12-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Immunogenic protein MPT63/MPB63 (protein)

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1MY6 \| pdb_00001my6	Download File View File

The 1.6 A Structure of Fe-Superoxide Dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus : Correlation of EPR and Structural Characteristics

Yoshida, S.M., Cascio, D., Sawaya, M.R., Yeates, T.O., Kerfeld, C.A.

(2003) J Biol Inorg Chem 8: 707-714

Released	2003-07-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermosynechococcus vestitus
Macromolecule	Iron (III) Superoxide Dismutase (protein)
Unique Ligands	FE

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1PK1 \| pdb_00001pk1	Download File View File

Hetero SAM domain structure of Ph and Scm.

Kim, C.A., Sawaya, M.R., Cascio, D., Kim, W., Bowie, J.U.

(2005) J Biological Chem 280: 27769-27775

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Polyhomeotic-proximal chromatin protein (protein) Sex comb on midleg CG9495-PA (protein)

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1PK3 \| pdb_00001pk3	Download File View File

Scm SAM domain

Kim, C.A., Sawaya, M.R., Cascio, D., Kim, W., Bowie, J.U.

(2005) J Biological Chem 280: 27769-27775

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Drosophila melanogaster
Macromolecule	Sex comb on midleg CG9495-PA (protein)
Unique Ligands	BME

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1RH6 \| pdb_00001rh6	Download File View File

Bacteriophage Lambda Excisionase (Xis)-DNA Complex

Sam, M.D., Cascio, D., Johnson, R.C., Clubb, R.T.

(2004) J Mol Biology 338: 229-240

Released	2004-06-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Lambdavirus lambda
Macromolecule	Excisionase (protein) 5'-D(CPTPAPTPGPTPAPGPTPCPTPGPTPTPG)-3' (nucleic acid) 5'-D(PCPAPAPCPAPGPAPCPTPAPCPAPTPAPG)-3' (nucleic acid)

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1RLC \| pdb_00001rlc	Download File View File

CRYSTAL STRUCTURE OF THE UNACTIVATED RIBULOSE 1, 5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE COMPLEXED WITH A TRANSITION STATE ANALOG, 2-CARBOXY-D-ARABINITOL 1,5-BISPHOSPHATE

Zhang, K.Y.J., Cascio, D., Eisenberg, D.

(1994) Protein Sci 3: 64-69

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Nicotiana tabacum
Macromolecule	RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN) (protein) RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN) (protein)
Unique Ligands	CAP

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1S3Q \| pdb_00001s3q	Download File View File

Crystal structures of a novel open pore ferritin from the hyperthermophilic Archaeon Archaeoglobus fulgidus

Johnson, E., Cascio, D., Sawaya, M., Schroeder, I.

(2005) Structure 13: 637-648

Released	2005-04-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	ferritin (protein)
Unique Ligands	ZN

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1SIX \| pdb_00001six	Download File View File

Mycobacterium tuberculosis dUTPase complexed with magnesium and alpha,beta-imido-dUTP

Sawaya, M.R., Chan, S., Segelke, B., Lekin, T., Krupka, H., Cho, U.-S., Kim, M., So, M., Kim, C.-Y., Naranjo, C.M., Rogers, Y.C., Park, M.S., Waldo, G.S., Pashkov, I., Cascio, D., Yeates, T.O., Perry, J.L., Terwilliger, T.C., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2004) J Mol Biology 341: 503-517

Released	2004-03-09
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	DUP, MG, TRS

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1SJN \| pdb_00001sjn	Download File View File

Mycobacterium tuberculosis dUTPase complexed with magnesium and alpha,beta-imido-dUTP

Sawaya, M.R., Chan, S., Segelke, B., Lekin, T., Krupka, H., Cho, U.S., Kim, M.-Y., So, M., Kim, C.-Y., Naranjo, C.M., Rogers, Y.C., Park, M.S., Waldo, G.S., Pashkov, I., Cascio, D., Yeates, T.O., Perry, J.L., Terwilliger, T.C., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2004) J Mol Biology 341: 503-517

Released	2004-03-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Deoxyuridine 5'-triphosphate nucleotidohydrolase (protein)
Unique Ligands	DUP, MG, NO3, TRS

1 to 25 of 319 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

126D | pdb_0000126d

158D | pdb_0000158d

1A04 | pdb_00001a04

1BGC | pdb_00001bgc

1BGD | pdb_00001bgd

1BGE | pdb_00001bge

1BYZ | pdb_00001byz

1COS | pdb_00001cos

1D30 | pdb_00001d30

1F0M | pdb_00001f0m

1F1E | pdb_00001f1e

1I8F | pdb_00001i8f

1JRK | pdb_00001jrk

1K26 | pdb_00001k26

1K2E | pdb_00001k2e

1L9L | pdb_00001l9l

1LMI | pdb_00001lmi

1MY6 | pdb_00001my6

1PK1 | pdb_00001pk1

1PK3 | pdb_00001pk3

1RH6 | pdb_00001rh6

1RLC | pdb_00001rlc

1S3Q | pdb_00001s3q

1SIX | pdb_00001six

1SJN | pdb_00001sjn