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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Prigozhin, D.M."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (9)
	Homo sapiens (2)
	Streptococcus agalactiae serogroup V (2)
	Mycobacterium tuberculosis (1)
	Mycobacterium tuberculosis H37Ra (1)

Taxonomy

	Bacteria (13)
	Eukaryota (2)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (9)
	2015 - 2019 (4)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (5)

Symmetry Type

Asymmetric (15)

SCOP Classification

Alpha and beta proteins (a+b) (1)

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1 to 15 of 15 Structures

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3OUV \| pdb_00003ouv	Download File View File

SeMet Derivative of L512M mutant of PASTA domain 3 of Mycobacterium tuberculosis PknB

Prigozhin, D.M., Chen, T.Y., Alber, T.

(2016) J Biological Chem 291: 22961-22969

Released	2011-09-21
Method	X-RAY DIFFRACTION 2.004 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Serine/threonine protein kinase (protein)

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4CGE \| pdb_00004cge	Download File View File

Crystal structure of Mycobacterium tuberculosis Resuscitation promoting factor E

Mavrici, D., Prigozhin, D.M., Alber, T.

(2014) Protein Sci 23: 481

Released	2014-02-05
Method	X-RAY DIFFRACTION 2.756 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	RESUSCITATION-PROMOTING FACTOR RPFE (protein)

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4ESQ \| pdb_00004esq	Download File View File

Crystal structure of the extracellular domain of PknH from Mycobacterium tuberculosis

Cavazos, A., Prigozhin, D.M., Alber, T.

(2012) J Mol Biology 422: 488-494

Released	2012-07-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine protein kinase (protein)
Unique Ligands	BTB, TB

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4G1H \| pdb_00004g1h	Download File View File

Group B Streptococcus Pilus Island 1 Sortase C2

Cozzi, R., Prigozhin, D.M., Alber, T.

(2012) PLoS One 7: e49048-e49048

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus agalactiae serogroup V
Macromolecule	Sortase family protein (protein)
Unique Ligands	CA

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4G1J \| pdb_00004g1j	Download File View File

Sortase C1 of GBS Pilus Island 1

Cozzi, R., Prigozhin, D.M., Alber, T.

(2012) PLoS One 7: e49048-e49048

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Streptococcus agalactiae serogroup V
Macromolecule	Sortase family protein (protein)

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4M6G \| pdb_00004m6g	Download File View File

Structure of the Mycobacterium tuberculosis peptidoglycan amidase Rv3717 in complex with L-Alanine-iso-D-Glutamine reaction product

Prigozhin, D.M., Mavrici, D., Huizar, J.P., Vansell, H.J., Alber, T., TB Structural Genomics Consortium (TBSGC)

(2013) J Biological Chem 288: 31549-31555

Released	2013-09-18
Method	X-RAY DIFFRACTION 2.104 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Peptidoglycan Amidase Rv3717 (protein)
Unique Ligands	ALA, ZGL, ZN

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4M6H \| pdb_00004m6h	Download File View File

Structure of the reduced, metal-free form of Mycobacterium tuberculosis peptidoglycan amidase Rv3717

Prigozhin, D.M., Mavrici, D., Huizar, J.P., Vansell, H.J., Alber, T., TB Structural Genomics Consortium (TBSGC)

(2013) J Biological Chem 288: 31549-31555

Released	2013-09-18
Method	X-RAY DIFFRACTION 2.194 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Peptidoglycan Amidase Rv3717 (protein)

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4M6I \| pdb_00004m6i	Download File View File

Structure of the reduced, Zn-bound form of Mycobacterium tuberculosis peptidoglycan amidase Rv3717

Prigozhin, D.M., Mavrici, D., Huizar, J.P., Vansell, H.J., Alber, T., TB Structural Genomics Consortium (TBSGC)

(2013) J Biological Chem 288: 31549-31555

Released	2013-09-18
Method	X-RAY DIFFRACTION 2.666 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Peptidoglycan Amidase Rv3717 (protein)
Unique Ligands	ZN

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4PPR \| pdb_00004ppr	Download File View File

Crystal structure of Mycobacterium tuberculosis D,D-peptidase Rv3330 in complex with meropenem

Prigozhin, D.M., Huizar, J.P., Mavrici, D., Alber, T., TB Structural Genomics Consortium (TBSGC)

(2014) PLoS One 9: e116249-e116249

Released	2014-11-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Penicillin-binding protein DacB1 (protein)
Unique Ligands	MER

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5E0Y \| pdb_00005e0y	Download File View File

Crystal Structure of PASTA Domain 4 of Mycobacterium tuberculosis Protein Kinase B

Prigozhin, D.M., TB Structural Genomics Consortium (TBSGC)

(2016) J Biological Chem 291: 22961-22969

Released	2016-09-14
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine-protein kinase PknB (protein)
Unique Ligands	ZN

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5E0Z \| pdb_00005e0z	Download File View File

Crystal Structure of PASTA Domains 3 and 4 of Mycobacterium tuberculosis Protein Kinase B

Prigozhin, D.M., TB Structural Genomics Consortium (TBSGC)

(2016) J Biological Chem 291: 22961-22969

Released	2016-09-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine-protein kinase PknB (protein)

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5E10 \| pdb_00005e10	Download File View File

Crystal Structure of PASTA Domains 1 and 2 of Mycobacterium tuberculosis Protein Kinase B

Prigozhin, D.M., TB Structural Genomics Consortium (TBSGC)

(2016) J Biological Chem 291: 22961-22969

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine-protein kinase PknB (protein)

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5E12 \| pdb_00005e12	Download File View File

Crystal Structure of PASTA Domains 2, 3 and 4 of Mycobacterium tuberculosis Protein Kinase B

Prigozhin, D.M., TB Structural Genomics Consortium (TBSGC)

(2016) J Biological Chem 291: 22961-22969

Released	2016-09-14
Method	X-RAY DIFFRACTION 2.208 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Serine/threonine-protein kinase PknB (protein)
Unique Ligands	FLC

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6SWG \| pdb_00006swg	Download File View File

Crystal structure of the TASOR-Periphilin core complex

Prigozhin, D.M., Freund, S.M.V., Modis, Y.

(2020) Nucleic Acids Res 48: 10313-10328

Released	2020-08-05
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	Periphilin-1 (protein) Protein TASOR (protein)
Unique Ligands	SO4

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8QFB \| pdb_00008qfb	Download File View File

Crystal structure of human MPP8 C-terminal region (residues 565-860)

Prigozhin, D.M., Modis, Y.

(2024) J Mol Biology 437: 168890-168890

Released	2024-09-11
Method	X-RAY DIFFRACTION 3.04 Å
Organisms	Homo sapiens
Macromolecule	M-phase phosphoprotein 8 (protein)

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3OUV | pdb_00003ouv

SeMet Derivative of L512M mutant of PASTA domain 3 of Mycobacterium tuberculosis PknB

4CGE | pdb_00004cge

Crystal structure of Mycobacterium tuberculosis Resuscitation promoting factor E

4ESQ | pdb_00004esq

Crystal structure of the extracellular domain of PknH from Mycobacterium tuberculosis

4G1H | pdb_00004g1h

Group B Streptococcus Pilus Island 1 Sortase C2

4G1J | pdb_00004g1j

Sortase C1 of GBS Pilus Island 1

4M6G | pdb_00004m6g

Structure of the Mycobacterium tuberculosis peptidoglycan amidase Rv3717 in complex with L-Alanine-iso-D-Glutamine reaction product

4M6H | pdb_00004m6h

Structure of the reduced, metal-free form of Mycobacterium tuberculosis peptidoglycan amidase Rv3717

4M6I | pdb_00004m6i

Structure of the reduced, Zn-bound form of Mycobacterium tuberculosis peptidoglycan amidase Rv3717

4PPR | pdb_00004ppr

Crystal structure of Mycobacterium tuberculosis D,D-peptidase Rv3330 in complex with meropenem

5E0Y | pdb_00005e0y

Crystal Structure of PASTA Domain 4 of Mycobacterium tuberculosis Protein Kinase B

5E0Z | pdb_00005e0z

Crystal Structure of PASTA Domains 3 and 4 of Mycobacterium tuberculosis Protein Kinase B

5E10 | pdb_00005e10

Crystal Structure of PASTA Domains 1 and 2 of Mycobacterium tuberculosis Protein Kinase B

5E12 | pdb_00005e12

Crystal Structure of PASTA Domains 2, 3 and 4 of Mycobacterium tuberculosis Protein Kinase B

6SWG | pdb_00006swg

Crystal structure of the TASOR-Periphilin core complex

8QFB | pdb_00008qfb

Crystal structure of human MPP8 C-terminal region (residues 565-860)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3OUV | pdb_00003ouv

4CGE | pdb_00004cge

4ESQ | pdb_00004esq

4G1H | pdb_00004g1h

4G1J | pdb_00004g1j

4M6G | pdb_00004m6g

4M6H | pdb_00004m6h

4M6I | pdb_00004m6i

4PPR | pdb_00004ppr

5E0Y | pdb_00005e0y

5E0Z | pdb_00005e0z

5E10 | pdb_00005e10

5E12 | pdb_00005e12

6SWG | pdb_00006swg

8QFB | pdb_00008qfb