RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Common Name (Entity Source Organism) = "MOUSE EAR CRESS"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 30 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Halorhodospira halophila (16)
	Halobacterium salinarum (13)
	Natronomonas pharaonis (1)

Taxonomy

	Bacteria (16)
	Archaea (14)

Experimental Method

	X-RAY DIFFRACTION (22)
	ELECTRON CRYSTALLOGRAPHY (4)
	SOLUTION NMR (4)

Polymer Entity Type

Protein (30)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (1)
	1.5 - 2.0 (14)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (3)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (13)
	2000 - 2004 (4)
	2005 - 2009 (9)

Membrane Protein Annotation

	PDBTM (14)
	MemProtMD (13)
	mpstruc (3)
	OPM (1)

Symmetry Type

	Asymmetric (20)
	Cyclic (10)

SCOP Classification

	Alpha and beta proteins (a+b) (16)
	Membrane and cell surface proteins and peptides (11)
	Peptides (3)

AllSelected

1 to 25 of 30 Polymer Entities

Page 1 of 2

Sort by

Explore in 3D

1AP9 \| pdb_00001ap9	Download File View File

X-RAY STRUCTURE OF BACTERIORHODOPSIN FROM MICROCRYSTALS GROWN IN LIPIDIC CUBIC PHASES

Pebay-Peyroula, E., Rummel, G., Rosenbusch, J.P., Landau, E.M.

(1997) Science 277: 1676-1681

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

Explore in 3D

1AT9 \| pdb_00001at9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY

Kimura, Y., Vassylyev, D.G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T., Fujiyoshi, Y.

(1997) Nature 389: 206-211

Released	1998-09-16
Method	ELECTRON CRYSTALLOGRAPHY 2.8 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

Explore in 3D

1BCT \| pdb_00001bct	Download File View File

THREE-DIMENSIONAL STRUCTURE OF PROTEOLYTIC FRAGMENT 163-231 OF BACTERIOOPSIN DETERMINED FROM NUCLEAR MAGNETIC RESONANCE DATA IN SOLUTION

Nolde, D.E., Barsukov, I.L., Lomize, A.L., Arseniev, A.S.

(1992) Eur J Biochem 206: 665-672

Released	1994-04-30
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)

Explore in 3D

1BHA \| pdb_00001bha	Download File View File

THREE-DIMENSIONAL STRUCTURE OF (1-71) BACTERIOOPSIN SOLUBILIZED IN METHANOL-CHLOROFORM AND SDS MICELLES DETERMINED BY 15N-1H HETERONUCLEAR NMR SPECTROSCOPY

Pervushin, K.V., Orekhov, V.Y., Popov, A.I., Musina, L.Y., Arseniev, A.S.

(1994) Eur J Biochem 219: 571-583

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)

Explore in 3D

1BHB \| pdb_00001bhb	Download File View File

Three-dimensional structure of (1-71) bacterioopsin solubilized in methanol-chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy

Orekhov, V.Y., Pervushin, K.V., Popov, A.I., Musina, L.Y., Arseniev, A.S.

(1994) Eur J Biochem 219: 571-583

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)

Explore in 3D

1BM1 \| pdb_00001bm1	Download File View File

CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE

Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N., Kouyama, T.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1251-1256

Released	1999-04-27
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	DPG, RET

Explore in 3D

1BRD \| pdb_00001brd	Download File View File

Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy

Henderson, R., Baldwin, J.M., Ceska, T.A., Zemlin, F., Beckmann, E., Downing, K.H.

(1990) J Mol Biology 213: 899-929

Released	1991-04-15
Method	ELECTRON CRYSTALLOGRAPHY 3.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN PRECURSOR (protein)
Unique Ligands	RET

Explore in 3D

1GUE \| pdb_00001gue	Download File View File

SENSORY RHODOPSIN II

Edman, K., Royant, A., Nollert, P., Maxwell, C.A., Pebay-Peyroula, E., Navarro, J., Neutze, R., Landau, E.M.

(2002) Structure 10: 473

Released	2002-04-12
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Natronomonas pharaonis
Macromolecule	SENSORY RHODOPSIN II (protein)
Unique Ligands	CL, RET

Explore in 3D

1QHJ \| pdb_00001qhj	Download File View File

X-RAY STRUCTURE OF BACTERIORHODOPSIN GROWN IN LIPIDIC CUBIC PHASES

Belrhali, H., Nollert, P., Royant, A., Menzel, C., Rosenbusch, J.P., Landau, E.M., Pebay-Peyroula, E.

(1999) Structure 7: 909-917

Released	1999-07-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum
Macromolecule	PROTEIN (BACTERIORHODOPSIN) (protein)
Unique Ligands	PH1, RET

Explore in 3D

1QKO \| pdb_00001qko	Download File View File

HIGH RESOLUTION X-RAY STRUCTURE OF AN EARLY INTERMEDIATE IN THE BACTERIORHODOPSIN PHOTOCYCLE

Edman, K., Nollert, P., Royant, A., Belrhali, H., Pebay-Peyroula, E., Hajdu, J., Neutze, R., Landau, E.M.

(1999) Nature 401: 822

Released	1999-10-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

Explore in 3D

1QKP \| pdb_00001qkp	Download File View File

HIGH RESOLUTION X-RAY STRUCTURE OF AN EARLY INTERMEDIATE IN THE BACTERIORHODOPSIN PHOTOCYCLE

Edman, K., Nollert, P., Royant, A., Belrhali, H., Pebay-Peyroula, E., Hajdu, J., Neutze, R., Landau, E.M.

(1999) Nature 401: 822-826

Released	1999-10-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

Explore in 3D

1QM8 \| pdb_00001qm8	Download File View File

Structure of Bacteriorhodopsin at 100 K

Takeda, K., Matsui, Y., Sato, H., Hino, T., Kanamori, E., Okumura, H., Yamane, T., Kamiya, N., Kouyama, T.

(1998) J Mol Biology 283: 463

Released	2000-08-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	L1P, L2P, L3P, L4P, RET
Unique branched monosaccharides	GAL, GLC, MAN

Explore in 3D

1S1Y \| pdb_00001s1y	Download File View File

Photoactivated chromophore conformation in Photoactive Yellow Protein (E46Q mutant) from 10 microseconds to 3 milliseconds

Anderson, S., Srajer, V., Pahl, R., Rajagopal, S., Schotte, F., Anfinrud, P., Wulff, M., Moffat, K.

(2004) Structure 12: 1039-1045

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1S1Z \| pdb_00001s1z	Download File View File

Photoactivated chromophore conformation in Photoactive Yellow Protein (E46Q mutant) from 10 to 500 nanoseconds

Anderson, S., Srajer, V., Pahl, R., Rajagopal, S., Schotte, F., Anfinrud, P., Wulff, M., Moffat, K.

(2004) Structure 12: 1039-1045

Released	2004-06-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive Yellow Protein (protein)
Unique Ligands	HC4

Explore in 3D

1T18 \| pdb_00001t18	Download File View File

Early intermediate IE1 from time-resolved crystallography of the E46Q mutant of PYP

Rajagopal, S., Anderson, S., Srajer, V., Schmidt, M., Pahl, R., Moffat, K.

(2005) Structure 13: 55-63

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1T19 \| pdb_00001t19	Download File View File

Early intermediate IE2 from time-resolved crystallography of the E46Q mutant of PYP

Rajagopal, S., Anderson, S., Srajer, V., Schmidt, M., Pahl, R., Moffat, K.

(2005) Structure 13: 55-63

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1T1A \| pdb_00001t1a	Download File View File

Late intermediate IL1 from time-resolved crystallography of the E46Q mutant of PYP

Rajagopal, S., Anderson, S., Srajer, V., Schmidt, M., Pahl, R., Moffat, K.

(2005) Structure 13: 55-63

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1T1B \| pdb_00001t1b	Download File View File

Late intermediate IL2 from time-resolved crystallography of the E46Q mutant of PYP

Rajagopal, S., Anderson, S., Srajer, V., Schmidt, M., Pahl, R., Moffat, K.

(2005) Structure 13: 55-63

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1T1C \| pdb_00001t1c	Download File View File

Late intermediate IL3 from time-resolved crystallography of the E46Q mutant of PYP

Rajagopal, S., Anderson, S., Srajer, V., Schmidt, M., Pahl, R., Moffat, K.

(2005) Structure 13: 55-63

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1TS0 \| pdb_00001ts0	Download File View File

Structure of the pB1 intermediate from time-resolved Laue crystallography

Ihee, H., Rajagopal, S., Srajer, V., Pahl, R., Anderson, S., Schmidt, M., Schotte, F., Anfinrud, P.A., Wulff, M., Moffat, K.

(2005) Proc Natl Acad Sci U S A 102: 7145-7150

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1TS6 \| pdb_00001ts6	Download File View File

Structure of the pB2 intermediate from time-resolved Laue crystallography

Ihee, H., Rajagopal, S., Srajer, V., Pahl, R., Anderson, S., Schmidt, M., Schotte, F., Anfinrud, P.A., Wulff, M., Moffat, K.

(2005) Proc Natl Acad Sci U S A 102: 7145-7150

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1TS7 \| pdb_00001ts7	Download File View File

Structure of the pR cis wobble and pR E46Q intermediates from time-resolved Laue crystallography

Ihee, H., Rajagopal, S., Srajer, V., Pahl, R., Anderson, S., Schmidt, M., Schotte, F., Anfinrud, P.A., Wulff, M., Moffat, K.

(2005) Proc Natl Acad Sci U S A 102: 7145-7150

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

1TS8 \| pdb_00001ts8	Download File View File

Structure of the pR cis planar intermediate from time-resolved Laue crystallography

Ihee, H., Rajagopal, S., Srajer, V., Pahl, R., Anderson, S., Schmidt, M., Schotte, F., Anfinrud, P.A., Wulff, M., Moffat, K.

(2005) Proc Natl Acad Sci U S A 102: 7145-7150

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

Explore in 3D

2AT9 \| pdb_00002at9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY

Mitsuoka, K., Hirai, T., Murata, K., Miyazawa, A., Kidera, A., Kimura, Y., Fujiyoshi, Y.

(1999) J Mol Biology 286: 861-882

Released	1999-04-27
Method	ELECTRON CRYSTALLOGRAPHY 3 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	2DP, RET

Explore in 3D

2BRD \| pdb_00002brd	Download File View File

CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN PURPLE MEMBRANE

Henderson, R., Grigorieff, N.

(1996) J Mol Biology 259: 393-421

Released	1996-06-10
Method	ELECTRON CRYSTALLOGRAPHY 3.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	DPG, RET

1 to 25 of 30 Polymer Entities

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AP9 | pdb_00001ap9

1AT9 | pdb_00001at9

1BCT | pdb_00001bct

1BHA | pdb_00001bha

1BHB | pdb_00001bhb

1BM1 | pdb_00001bm1

1BRD | pdb_00001brd

1GUE | pdb_00001gue

1QHJ | pdb_00001qhj

1QKO | pdb_00001qko

1QKP | pdb_00001qkp

1QM8 | pdb_00001qm8

1S1Y | pdb_00001s1y

1S1Z | pdb_00001s1z

1T18 | pdb_00001t18

1T19 | pdb_00001t19

1T1A | pdb_00001t1a

1T1B | pdb_00001t1b

1T1C | pdb_00001t1c

1TS0 | pdb_00001ts0

1TS6 | pdb_00001ts6

1TS7 | pdb_00001ts7

1TS8 | pdb_00001ts8

2AT9 | pdb_00002at9

2BRD | pdb_00002brd