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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Salasvirus phi29"

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Search Summary

This query matches 71 Structures.

Refinements

Structure Determination Methodology

experimental (71)

Scientific Name of Source Organism

	Salasvirus phi29 (62)
	Bacillus phage phi29 (9)
	Homo sapiens (9)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Escherichia coli (1)
	Gallus gallus (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Duplodnaviria (71)
	Eukaryota (10)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (53)
	ELECTRON MICROSCOPY (15)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (68)
	DNA (9)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (11)
	2.0 - 2.5 (20)
	2.5 - 3.0 (12)
	3.0 - 3.5 (13)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (23)
	2010 - 2014 (7)
	2015 - 2019 (22)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (19)
	Transferases (8)

Membrane Protein Annotation

PDBTM (1)

Symmetry Type

	Asymmetric (29)
	Cyclic (40)
	Dihedral (6)
	Icosahedral (1)

SCOP Classification

	Multi-domain proteins (alpha and beta) (12)
	Alpha and beta proteins (a/b) (9)
	All alpha proteins (4)
	Coiled coil proteins (4)
	Artifacts (3)

AllSelected

1 to 25 of 71 Structures

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1FOQ \| pdb_00001foq	Download File View File

PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA

Simpson, A.A., Tao, Y., Leiman, P.G., Badasso, M.O., He, Y., Jardine, P.J., Olson, N.H., Morais, M.C., Grimes, S., Anderson, D.L., Baker, T.S., Rossmann, M.G.

(2000) Nature 408: 745-750

Released	2000-12-22
Method	ELECTRON MICROSCOPY 20 Å
Organisms	Salasvirus phi29
Macromolecule	BACTERIOPHAGE PHI29 PROHEAD RNA (nucleic acid)

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1FOU \| pdb_00001fou	Download File View File

CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29

Simpson, A.A., Tao, Y., Leiman, P.G., Badasso, M.O., He, Y., Jardine, P.J., Olson, N.H., Morais, M.C., Grimes, S.N., Anderson, D.L., Baker, T.S., Rossmann, M.G.

(2000) Nature 408: 745-750

Released	2000-12-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Salasvirus phi29
Macromolecule	UPPER COLLAR PROTEIN (protein)

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1H5W \| pdb_00001h5w	Download File View File

2.1A Bacteriophage Phi-29 Connector

Guasch, A., Pous, J., Ibarra, B., Gomis-Ruth, F.X., Valpuesta, J.M., Sousa, N., Carrascosa, J.L., Coll, M.

(2002) J Mol Biology 315: 663

Released	2002-02-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salasvirus phi29
Macromolecule	UPPER COLLAR PROTEIN (protein)
Unique Ligands	MPD

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1IJG \| pdb_00001ijg	Download File View File

Structure of the Bacteriophage phi29 Head-Tail Connector Protein

Simpson, A.A., Leiman, P.G., Tao, Y., He, Y., Badasso, M., Jardine, P.J., Anderson, D.L., Rossmann, M.G.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1260-1269

Released	2001-05-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Salasvirus phi29
Macromolecule	UPPER COLLAR PROTEIN (protein)

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1JNB \| pdb_00001jnb	Download File View File

CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29

Simpson, A.A., Leiman, P.G., Tao, Y., He, Y., Badasso, M.O., Jardine, P.J., Anderson, D.L., Rossmann, M.G.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1260-1269

Released	2001-08-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Salasvirus phi29
Macromolecule	UPPER COLLAR PROTEIN (protein)

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1NO4 \| pdb_00001no4	Download File View File

Crystal Structure of the pre-assembly scaffolding protein gp7 from the double-stranded DNA bacteriophage phi29

Morais, M.C., Kanamaru, S., Badasso, M.O., Koti, J.S., Owen, B.A.L., McMurray, C.T., Anderson, D.L., Rossmann, M.G.

(2003) Nat Struct Biol 10: 572-576

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salasvirus phi29
Macromolecule	HEAD MORPHOGENESIS PROTEIN (protein)

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1NOH \| pdb_00001noh	Download File View File

The structure of bacteriophage phi29 scaffolding protein gp7 after prohead assembly

Morais, M.C., Kanamaru, S., Badasso, M.O., Koti, J.S., Owen, B.L., McMurray, C.T., L Anderson, D., Rossmann, M.G.

(2003) Nat Struct Biol 10: 572-576

Released	2003-07-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Salasvirus phi29
Macromolecule	HEAD MORPHOGENESIS PROTEIN (protein)

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1XHX \| pdb_00001xhx	Download File View File

Phi29 DNA Polymerase, orthorhombic crystal form

Kamtekar, S., Berman, A.J., Wang, J., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2004) Mol Cell 16: 609-618

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein)
Unique Ligands	MG, SO4

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1XHZ \| pdb_00001xhz	Download File View File

Phi29 DNA polymerase, orthorhombic crystal form, ssDNA complex

Kamtekar, S., Berman, A.J., Wang, J., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2004) Mol Cell 16: 609-618

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-D(TPTPTPTP*T)-3' (nucleic acid)

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1XI1 \| pdb_00001xi1	Download File View File

Phi29 DNA polymerase ssDNA complex, monoclinic crystal form

Kamtekar, S., Berman, A.J., Wang, J., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2005) Acta Crystallogr D Biol Crystallogr 61: 67-74

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-D(PTPTPTPTP*T)-3' (nucleic acid)
Unique Ligands	MG

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1YXN \| pdb_00001yxn	Download File View File

Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29

Morais, M.C., Choi, K.H., Koti, J.S., Chipman, P.R., Anderson, D.L., Rossmann, M.G.

(2005) Mol Cell 18: 149-159

Released	2005-04-26
Method	ELECTRON MICROSCOPY 7.9 Å
Organisms	Salasvirus phi29
Macromolecule	Major head protein (protein)

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1ZAE \| pdb_00001zae	Download File View File

Solution structure of the functional domain of phi29 replication organizer p16.7c

Asensio, J.L., Albert, A., Munoz-Espin, D., Gonzalez, C., Hermoso, J., Villar, L., Jimenez-Barbero, J., Salas, M., Meijer, W.J.J.

(2005) J Biological Chem 280: 20730-20739

Released	2005-04-19
Method	SOLUTION NMR
Organisms	Salasvirus phi29
Macromolecule	Early protein GP16.7 (protein)

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2BNK \| pdb_00002bnk	Download File View File

The structure of phage phi29 replication organizer protein p16.7

Albert, A., Asensio, J.L., Munoz-Espin, D., Gonzalez, C., Hermoso, J.A., Villar, L., Jimenez-Barbero, J., Salas, M., Meijer, W.J.J.

(2005) J Biological Chem 280: 20730

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Salasvirus phi29
Macromolecule	EARLY PROTEIN GP16.7 (protein)

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2C5R \| pdb_00002c5r	Download File View File

The structure of phage phi29 replication organizer protein p16.7 in complex with double stranded DNA

Albert, A., Jimenez, M., Munoz-Espin, D., Asensio, J.L., Hermoso, J.A., Salas, M., Meijer, W.J.J.

(2005) J Biological Chem 280: 42486

Released	2005-11-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Salasvirus phi29
Macromolecule	EARLY PROTEIN P16.7 (protein) 5'-D(CPCPGPGPTPGPGPAP)-3' (nucleic acid) 5'-D(TPCPCPAPCPCPGPGP)-3' (nucleic acid)

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2EX3 \| pdb_00002ex3	Download File View File

Bacteriophage phi29 DNA polymerase bound to terminal protein

Kamtekar, S., Berman, A.J., Wang, J., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2006) EMBO J 25: 1335-1343

Released	2006-03-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) DNA terminal protein (protein)
Unique Ligands	PB

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2FIO \| pdb_00002fio	Download File View File

Phage phi29 transcription regulator p4-DNA complex

Badia, D., Camacho, A., Perez-Lago, L., Escandon, C., Salas, M., Coll, M.

(2006) Mol Cell 22: 73-81

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Salasvirus phi29
Macromolecule	Late genes activator (protein) DNA (41-MER) (nucleic acid)

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2FIP \| pdb_00002fip	Download File View File

Phage phi29 transcription regulator p4

Badia, D., Camacho, A., Perez-Lago, L., Escandon, C., Salas, M., Coll, M.

(2006) Mol Cell 22: 73-81

Released	2006-09-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salasvirus phi29
Macromolecule	Late genes activator (protein)

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2LE2 \| pdb_00002le2	Download File View File

Novel dimeric structure of phage phi29-encoded protein p56: Insights into Uracil-DNA glycosylase inhibition

Asensio, J., Perez-Lago, L., Lazaro, J.M., Gonzalez, C., Serrano-Heras, G., Salas, M.

(2011) Nucleic Acids Res 39: 9779-9788

Released	2011-09-28
Method	SOLUTION NMR
Organisms	Salasvirus phi29
Macromolecule	P56 (protein)

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2PY5 \| pdb_00002py5	Download File View File

Phi29 DNA polymerase complexed with single-stranded DNA

Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2007) EMBO J 26: 3494-3505

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-d(GGACTTT)-3' (nucleic acid)
Unique Ligands	EDO

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2PYJ \| pdb_00002pyj	Download File View File

Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex)

Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2007) EMBO J 26: 3494-3505

Released	2007-07-17
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-d(ACACGTAAGCAGTC)-3' (nucleic acid) 5'-d(GACTGCTTA(DOC)-3' (nucleic acid)
Unique Ligands	DGT, EDO, MG, MN

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2PYL \| pdb_00002pyl	Download File View File

Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex)

Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2007) EMBO J 26: 3494-3505

Released	2007-07-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-d(CTGACGAATGTACA)-3' (nucleic acid) 5'-d(GACTGCTTAC(2DA))-3' (nucleic acid)
Unique Ligands	EDO, MG, TTP

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2PZS \| pdb_00002pzs	Download File View File

Phi29 DNA polymerase complexed with primer-template DNA (post-translocation binary complex)

Berman, A.J., Kamtekar, S., Goodman, J.L., Lazaro, J.M., de Vega, M., Blanco, L., Salas, M., Steitz, T.A.

(2007) EMBO J 26: 3494-3505

Released	2007-07-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Salasvirus phi29
Macromolecule	DNA polymerase (protein) 5'-d(CTAACACGTAAGCAGTC)-3' (nucleic acid) 5'-d(GACTGCTTAC)-3' (nucleic acid)

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3CSQ \| pdb_00003csq	Download File View File

Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail

Xiang, Y., Rossmann, M.G.

(2008) Proc Natl Acad Sci U S A 105: 9552-9557

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus phage phi29
Macromolecule	Morphogenesis protein 1 (protein)
Unique Ligands	ZN

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3CSR \| pdb_00003csr	Download File View File

Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail

Xiang, Y., Rossmann, M.G.

(2008) Proc Natl Acad Sci U S A 105: 9552-9557

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus phage phi29
Macromolecule	Morphogenesis protein 1 (protein)

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3CSZ \| pdb_00003csz	Download File View File

Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail

Xiang, Y., Rossmann, M.G.

(2008) Proc Natl Acad Sci U S A 105: 9552-9557

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus phage phi29
Macromolecule	Morphogenesis protein 1 (protein)
Unique branched monosaccharides	NAG

1 to 25 of 71 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FOQ | pdb_00001foq

1FOU | pdb_00001fou

1H5W | pdb_00001h5w

1IJG | pdb_00001ijg

1JNB | pdb_00001jnb

1NO4 | pdb_00001no4

1NOH | pdb_00001noh

1XHX | pdb_00001xhx

1XHZ | pdb_00001xhz

1XI1 | pdb_00001xi1

1YXN | pdb_00001yxn

1ZAE | pdb_00001zae

2BNK | pdb_00002bnk

2C5R | pdb_00002c5r

2EX3 | pdb_00002ex3

2FIO | pdb_00002fio

2FIP | pdb_00002fip

2LE2 | pdb_00002le2

2PY5 | pdb_00002py5

2PYJ | pdb_00002pyj

2PYL | pdb_00002pyl

2PZS | pdb_00002pzs

3CSQ | pdb_00003csq

3CSR | pdb_00003csr

3CSZ | pdb_00003csz