RCSB PDB: Search

2M4E \| pdb_00002m4e	Download File View File

Solution NMR structure of VV2_0175 from Vibrio vulnificus, NESG target VnR1 and CSGID target IDP91333

Wu, B., Yee, A., Houliston, S., Lemak, A., Garcia, M., Savchenko, A., Arrowsmith, C.H., Anderson, W.F., Northeast Structural Genomics Consortium (NESG), Ontario Centre for Structural Proteomics (OCSP), Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-03-13
Method	SOLUTION NMR
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Putative uncharacterized protein (protein)

Explore in 3D

2PLJ \| pdb_00002plj	Download File View File

Crystal structure of lysine/ornithine decarboxylase complexed with putrescine from Vibrio vulnificus

Lee, J., Goldsmith, E.J., Phillips, M.A.

(2007) J Biological Chem 282: 27115-27125

Released	2007-07-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	lysine/ornithine decarboxylase (protein)
Unique Ligands	MG, P3T

Explore in 3D

2PLK \| pdb_00002plk	Download File View File

Crystal structure of lysine/ornithine decarboxylase complexed with cadaverine from Vibrio vulnificus

Lee, J., Goldsmith, E.J., Phillips, M.A.

(2007) J Biological Chem 282: 27115-27125

Released	2007-07-10
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	lysine/ornithine decarboxylase (protein)
Unique Ligands	P3D

Explore in 3D

3JTH \| pdb_00003jth	Download File View File

Crystal structure of a transcriptional regulator HlyU from Vibrio vulnificus CMCP6

Nishi, K., Lee, H.J., Park, S.Y., Kim, J.S.

(2010) FEBS Lett

Released	2010-03-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Transcription activator HlyU (protein)

Explore in 3D

3OUR \| pdb_00003our	Download File View File

Crystal structure of complex between EIIA and a novel pyruvate decarboxylase

Jeong, C.S., An, Y.J., Cha, S.S.

(2011) Nat Chem Biol 7: 434-436

Released	2011-06-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Phosphotransferase system IIA component (protein) UPF0255 protein VV1_0328 (protein)

Explore in 3D

3UPD \| pdb_00003upd	Download File View File

2.9 Angstrom Crystal Structure of Ornithine Carbamoyltransferase (ArgF) from Vibrio vulnificus

Minasov, G., Halavaty, A., Shuvalova, L., Winsor, J., Dubrovska, I., Papazisi, L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2011-12-07
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Ornithine carbamoyltransferase (protein)

Explore in 3D

3VCZ \| pdb_00003vcz	Download File View File

1.80 Angstrom resolution crystal structure of a putative translation initiation inhibitor from Vibrio vulnificus CMCP6

Halavaty, A.S., Minasov, G., Filippova, E.V., Dubrovska, I., Winsor, J., Shuvalova, L., Papazisi, L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Endoribonuclease L-PSP (protein)
Unique Ligands	CA, GOL, MG

Explore in 3D

4E0B \| pdb_00004e0b	Download File View File

2.17 Angstrom resolution crystal structure of malate dehydrogenase from Vibrio vulnificus CMCP6

Halavaty, A.S., Wawrzak, Z., Onopriyenko, O., Kwon, K., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Malate dehydrogenase (protein)
Unique Ligands	ACT

Explore in 3D

4E6Y \| pdb_00004e6y	Download File View File

Type II citrate synthase from Vibrio vulnificus.

Osipiuk, J., Gu, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2012-03-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Citrate synthase (protein)
Unique Ligands	FMT

Explore in 3D

4G65 \| pdb_00004g65	Download File View File

Potassium transporter peripheral membrane component (trkA) from Vibrio vulnificus

Filippova, E.V., Wawrzak, Z., Skarina, T., Onopriyenko, O., Edwards, A., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2012-08-15
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Trk system potassium uptake protein trkA (protein)
Unique Ligands	CL, PG4, SO4

Explore in 3D

4GHJ \| pdb_00004ghj	Download File View File

1.75 Angstrom Crystal Structure of Transcriptional Regulator ftom Vibrio vulnificus.

Minasov, G., Shuvalova, L., Dubrovska, I., Winsor, J., Grimshaw, S., Papazisi, L., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Probable transcriptional regulator (protein)

Explore in 3D

4H31 \| pdb_00004h31	Download File View File

Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with carbamoyl phosphate and L-norvaline

Shabalin, I.G., Winsor, J., Grimshaw, S., Osinski, T., Chordia, M.D., Shuvalova, L., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2012-09-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Ornithine carbamoyltransferase (protein)
Unique Ligands	CL, CP, NVA, PE5, PEG

Explore in 3D

4JFR \| pdb_00004jfr	Download File View File

Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with carbamoyl phosphate

Shabalin, I.G., Winsor, J., Grimshaw, S., Osinski, T., Bajor, J., Chordia, M.D., Shuvalova, L., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-03-13
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Ornithine carbamoyltransferase (protein)
Unique Ligands	CL, CP, MG

Explore in 3D

4JHX \| pdb_00004jhx	Download File View File

Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with carbamoylphosphate and arginine

Shabalin, I.G., Bacal, P., Winsor, J., Grimshaw, S., Grabowski, M., Chordia, M.D., Shuvalova, L., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Ornithine carbamoyltransferase (protein)
Unique Ligands	ARG, CL, CP, PEG

Explore in 3D

4JQO \| pdb_00004jqo	Download File View File

Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with citrulline and inorganic phosphate

Shabalin, I.G., Winsor, J., Grimshaw, S., Domagalski, M.J., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.082 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Ornithine carbamoyltransferase (protein)
Unique Ligands	CIR, CL, PEG, PO4

Explore in 3D

4KWT \| pdb_00004kwt	Download File View File

Crystal structure of unliganded anabolic ornithine carbamoyltransferase from Vibrio vulnificus at 1.86 A resolution

Shabalin, I.G., Bacal, P., Bajor, J., Winsor, J., Grimshaw, S., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Ornithine carbamoyltransferase (protein)
Unique Ligands	CL, PEG

Explore in 3D

4OWJ \| pdb_00004owj	Download File View File

Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin

Kaus, K., Olson, R.

(2014) J Mol Biology 426: 2800-2812

Released	2014-05-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Cytolysin (protein)
Unique Ligands	GOL

Explore in 3D

4OWK \| pdb_00004owk	Download File View File

Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Galactosamine Bound

Kaus, K., Olson, R.

(2014) J Mol Biology 426: 2800-2812

Released	2014-05-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Cytolysin (protein)
Unique Ligands	GOL, NGA

Explore in 3D

4OWL \| pdb_00004owl	Download File View File

Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound

Kaus, K., Olson, R.

(2014) J Mol Biology 426: 2800-2812

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	Cytolysin (protein)
Unique Ligands	GAL, GOL
Unique branched monosaccharides	GAL, NAG

Explore in 3D

4PHT \| pdb_00004pht	Download File View File

ATPase GspE in complex with the cytoplasmic domain of GspL from the Vibrio vulnificus type II Secretion system

Lu, C., Korotkov, K., Hol, W.

(2014) J Struct Biol 187: 223-235

Released	2014-11-26
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	General secretory pathway protein E (protein) Type II secretion system protein L (protein)
Unique Ligands	ANP, MG, ZN

Explore in 3D

5IZN \| pdb_00005izn	Download File View File

The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus CMCP6

Tan, K., Zhou, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	50S ribosomal protein L25 (protein)
Unique Ligands	PO4

Explore in 3D

5KQO \| pdb_00005kqo	Download File View File

1-deoxy-D-xylulose 5-phosphate reductoisomerase from Vibrio vulnificus

Ussin, N., Offermann, L.R., Perdue, M., Chruszcz, M.

(2018) Biochim Biophys Acta Proteins Proteom 1866: 1209-1215

Released	2017-07-12
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	EDO, PO4

Explore in 3D

5KRR \| pdb_00005krr	Download File View File

1-deoxy-D-xylulose 5-phosphate reductoisomerase from Vibrio vulnificus in complex with Mn(2+)

Ussin, N., Abdulsalam, R.W., Offermann, L.R., Perdue, M., Chruszcz, M.

(2018) Biochim Biophys Acta Proteins Proteom 1866: 1209-1215

Released	2017-07-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	CL, EDO, MN

Explore in 3D

5KRV \| pdb_00005krv	Download File View File

1-deoxy-D-xylulose 5-phosphate reductoisomerase from Vibrio vulnificus in complex Arginine

Ussin, N., Abdulsalam, R.W., Magee, P., Chruszcz, M.

(2018) Biochim Biophys Acta Proteins Proteom 1866: 1209-1215

Released	2017-07-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	ARG, CL, EDO, SRT

Explore in 3D

5KRY \| pdb_00005kry	Download File View File

1-deoxy-D-xylulose 5-phosphate reductoisomerase from Vibrio vulnificus

Ussin, N., Abdulsalam, R.W., Chruszcz, M.

(2018) Biochim Biophys Acta Proteins Proteom 1866: 1209-1215

Released	2017-07-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	EDO

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2M4E | pdb_00002m4e

2PLJ | pdb_00002plj

2PLK | pdb_00002plk

3JTH | pdb_00003jth

3OUR | pdb_00003our

3UPD | pdb_00003upd

3VCZ | pdb_00003vcz

4E0B | pdb_00004e0b

4E6Y | pdb_00004e6y

4G65 | pdb_00004g65

4GHJ | pdb_00004ghj

4H31 | pdb_00004h31

4JFR | pdb_00004jfr

4JHX | pdb_00004jhx

4JQO | pdb_00004jqo

4KWT | pdb_00004kwt

4OWJ | pdb_00004owj

4OWK | pdb_00004owk

4OWL | pdb_00004owl

4PHT | pdb_00004pht

5IZN | pdb_00005izn

5KQO | pdb_00005kqo

5KRR | pdb_00005krr

5KRV | pdb_00005krv

5KRY | pdb_00005kry